Locus 3168

Sequence ID 2L_DroMel_CAF1
Location 9,069,768 – 9,069,860
Length 92
Max. P 0.500000
window5036

overview

Window 6

Location 9,069,768 – 9,069,860
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 82.97
Mean single sequence MFE -23.00
Consensus MFE -16.08
Energy contribution -14.95
Covariance contribution -1.13
Combinations/Pair 1.30
Mean z-score -1.47
Structure conservation index 0.70
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9069768 92 - 22407834
ACAGACAACGCAGAGAGUACAGUGGGGCCUAUGUGUUACUGGACACAACUGUAUUCCAAAUGCAGAAUAAGUCUUUGAGUAUGAAUAUUGUC
...((((((.((((((((.((((((.((....)).)))))).))....((((((.....))))))......)))))).))........)))) ( -22.00)
>DroSec_CAF1 63408 90 - 1
ACAGACAACGCAG--UGUACAGUGGGGCUUAUGUGUUACUGGGCACAGCCCUAUUCCAAAUGGAGAAUAAAUCUUUGUCUAUGAAUAUUGUC
...(((((.((.(--((..((((((.((....)).))))))..))).))..(((((...(..((((.....))))..)....)))))))))) ( -25.80)
>DroSim_CAF1 69048 90 - 1
ACAGACAACGCAG--UGUACAGUGGGGCUUAUGUGUUACUGGACACAGAUCUAUUCCAAAUGGAGAAUAAAUCUUUGUGUAUGAAUAUUGUC
...((((((((((--(((.((((((.((....)).)))))).))))((((.(((((........))))).)))).)))))........)))) ( -24.70)
>DroEre_CAF1 65714 82 - 1
ACAGGCAGCGCAG--AGUACAGUGAGGCUUAUGCGUUGCUGGACACA--UCUAUUCCGACUGCAGAAUAUUUCAUU------GAAAAUUGUC
...((((((((((--(((........)))).))))))))).((((..--..(((((........)))))((((...------))))..)))) ( -19.50)
>consensus
ACAGACAACGCAG__AGUACAGUGGGGCUUAUGUGUUACUGGACACAGCUCUAUUCCAAAUGCAGAAUAAAUCUUUGUGUAUGAAUAUUGUC
...(((((........((.((((((.((....)).)))))).)).......(((((........)))))..................))))) (-16.08 = -14.95 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:59 2006