Locus 3167

Sequence ID 2L_DroMel_CAF1
Location 9,066,324 – 9,066,415
Length 91
Max. P 0.500000
window5035

overview

Window 5

Location 9,066,324 – 9,066,415
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.51
Mean single sequence MFE -32.05
Consensus MFE -23.97
Energy contribution -24.61
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -0.96
Structure conservation index 0.75
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9066324 91 - 22407834
--------------------------GCAACGGCAAGUUGAUGUUGCCCCCGUCCUGGCAUCUAAUUGGGGCCCUCCUAGUGCUCGCGGCAACAGCGGGGGACUCCACCAA---CAAGAU
--------------------------((....))..((((.((..((((((((....((.....((((((.....)))))).......))....))))))).)..)).)))---)..... ( -29.90)
>DroPse_CAF1 76625 99 - 1
---------------------CCAGAAGAACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGGGCCCUCCUCGUGCUCACGGCCACAGCGGGGGACGCCACCAACAACAAGAU
---------------------..........((((.((.......))))))((((((........(((((((..(((((((((.....))....)))))))..))).))))...)))))) ( -29.40)
>DroGri_CAF1 97362 91 - 1
--------------------------GCAACGGCAAGUUGAUGUUGCUGCCGUCUUGGCAUCUGAUUGGGGCCCUCCUAGUGCUCAUGGCAACAGCGGGGGACUCCACCAA---UAAGAU
--------------------------((.((((((.((.......))))))))....))((((.((((((((((((((..(((.....)))..)).)))))...)).))))---).)))) ( -34.00)
>DroWil_CAF1 109551 117 - 1
GCUCCUCCGUGUUAAUAUCAAGCACUAGUACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGAGCCCUCCUAGUGCUAACGGCAACUGCGGGGGACUCCACCAA---UAAGAU
..((((((((..........((((((((...(((...(..((...(.((((.....)))).)..))..).)))...))))))))...(....).)))))))).........---...... ( -39.10)
>DroMoj_CAF1 113750 91 - 1
--------------------------AAUACAGCAAGCUGAUGUUGCUACCGUCUUGGCAUCUAAUUGGAGCCCUGCUAGUGCUGACGGCAACAGCGGGGGACUCCACCAA---CAAGAU
--------------------------.....(((((.(....))))))...((((((.........((((((((((((..(((.....)))..)))))))..)))))....---)))))) ( -30.52)
>DroPer_CAF1 75520 99 - 1
---------------------CCAGAAGAACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGGGCCCUCCUCGUGCUCACGGCCACAGCGGGGGACGCCACCAACAACAAGAU
---------------------..........((((.((.......))))))((((((........(((((((..(((((((((.....))....)))))))..))).))))...)))))) ( -29.40)
>consensus
__________________________AGAACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGGGCCCUCCUAGUGCUCACGGCAACAGCGGGGGACUCCACCAA___CAAGAU
..............................((((((.......))))))..((((((.........((((((((((((..(((.....)))..)).))))).))))).......)))))) (-23.97 = -24.61 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006