Locus 3166

Sequence ID 2L_DroMel_CAF1
Location 9,065,515 – 9,065,612
Length 97
Max. P 0.689746
window5034

overview

Window 4

Location 9,065,515 – 9,065,612
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -26.50
Consensus MFE -17.45
Energy contribution -18.15
Covariance contribution 0.70
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 0.66
SVM decision value 0.33
SVM RNA-class probability 0.689746
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9065515 97 - 22407834
UGAGCCGCAGGGCAAAUGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGGGCGGCAAAGGUAGCAGUUCACAGAUAACCUC
...(((....)))...(((((.((..(((.....)))...........((.((((..-((.(......).))..)))).)).)))))))......... ( -26.30)
>DroSec_CAF1 59275 97 - 1
UUAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGGGCGGCAAAGGUAGAAGUUCACAGAUAACCUC
...(((((...((..(((((......(((.....)))......(....).)))))..-)).......)))))..((((...............)))). ( -25.46)
>DroSim_CAF1 64926 97 - 1
UGAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGGGCGGCAAAGGUAGCAGUUCACAGAUAACCUC
...(((((...((..(((((......(((.....)))......(....).)))))..-)).......)))))..((((..(........)...)))). ( -25.90)
>DroEre_CAF1 61633 93 - 1
UGAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGAGCGGCAAAGGUAGCAGUUCACAGAUAG----
...(((....)))....((((.((..(((.....)))...........((.((((..-((.(......).))..)))).)).))))))......---- ( -25.30)
>DroYak_CAF1 61075 89 - 1
UGAGCCGCUGGGCAAAGGUGGUACAAGGCUUUAUGCCAAAAAUGGAAAGCCACCUGG-GCAGAAUGAGCGGCAAAGGCAGCA---CACAAAAA-----
...((((((.(((..(((((((....(((.....))).....(....))))))))..-))....).))))))..........---........----- ( -30.50)
>DroAna_CAF1 64723 81 - 1
UGUGCCUCGGGGCAUACGCGCUACACGGCUUUAUGCCAAAAAUUGAAAGCCAGCUAAAGCAG---UAGCUGCA--------------CAGAUAUAUUU
((((((....)))))).(((((((..((((((.............)))))).((....)).)---)))).)).--------------........... ( -25.52)
>consensus
UGAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG_GCAGAAUGAGCGGCAAAGGUAGCAGUUCACAGAUAACCUC
...(((((..(((((((((........))))).))))...........((........)).......))))).......................... (-17.45 = -18.15 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:57 2006