Locus 3161

Sequence ID 2L_DroMel_CAF1
Location 9,049,863 – 9,049,961
Length 98
Max. P 0.558845
window5027

overview

Window 7

Location 9,049,863 – 9,049,961
Length 98
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.05
Mean single sequence MFE -23.83
Consensus MFE -16.91
Energy contribution -16.75
Covariance contribution -0.16
Combinations/Pair 1.38
Mean z-score -1.42
Structure conservation index 0.71
SVM decision value 0.05
SVM RNA-class probability 0.558845
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9049863 98 + 22407834
GGCCCCUACUCGCGUU-UUUCCAUUCUGUU-UU----AAGGCAGCCUAA-AAAGUAUGCAGUCACAACUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA
.......(((((((..-........(((((-..----..)))))..(((-((.(((((((((....))))))))).)))))..........)))))))....... ( -23.40)
>DroSec_CAF1 43866 98 + 1
GGCCCAUACUCGCGUU-UUUCCAUUCUGUU-UU----AAGGCAGCCUAA-AAAGUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA
(((((((.........-........(((((-..----..)))))..(((-((.(((((((((....))))))))).)))))...........)))))))...... ( -24.10)
>DroSim_CAF1 49334 98 + 1
GGCCCAUACUCGCGUG-UUUUCAUUCUGUU-UU----AAGGCAGCCUAA-AAAGUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA
(((((((......(((-........(((((-..----..)))))..(((-((.(((((((((....))))))))).)))))...))).....)))))))...... ( -25.00)
>DroEre_CAF1 46378 99 + 1
GGCCCCAGCUCGCGUU-UUUCCAUUCUGUUUUC----AAGGCAGCCUAA-AAAGAAUGCAGUCGCAGCUGCAUAUAUUUUGAGCCAGAUUCCGUGGGUUUUUCAA
((((((.(((((((((-(((.....(((((...----..))))).....-.))))))))....((....)).........))))..(....)).)))))...... ( -21.80)
>DroYak_CAF1 45216 97 + 1
GGCCC-UGUUCGCGUU-UUUCCAUUCUGUU-UC----AAGGCAGCCUAA-AAAGUAUGCAGUCGCAGCUGCAUAUAUUUCGAAUCAGAUUUCGUGGUUUUUUCCA
((...-...(((((..-.......((((.(-((----.(((...)))..-...(((((((((....))))))))).....))).))))...)))))......)). ( -22.70)
>DroAna_CAF1 50084 103 + 1
UCCUC-AACUUGGAUUGGUUUUUUUUUGGU-UUGUAAAAAACUGCCUAAAAAAGUAUGCAGUCGCAGCUGCAUCCAUGUUGUGCCAAAUUCCCAGAGUUUGCCAA
....(-(((.((((..(((..(((((((..-...)))))))..)))..........((((((....)))))))))).))))((.(((((((...))))))).)). ( -26.00)
>consensus
GGCCC_UACUCGCGUU_UUUCCAUUCUGUU_UU____AAGGCAGCCUAA_AAAGUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA
.......(((((((...........(((((.........))))).........(((((((((....)))))))))................)))))))....... (-16.91 = -16.75 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:51 2006