Locus 3159

Sequence ID 2L_DroMel_CAF1
Location 9,037,262 – 9,037,378
Length 116
Max. P 0.999865
window5022

overview

Window 2

Location 9,037,262 – 9,037,378
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.45
Mean single sequence MFE -24.16
Consensus MFE -22.61
Energy contribution -22.33
Covariance contribution -0.28
Combinations/Pair 1.19
Mean z-score -2.43
Structure conservation index 0.94
SVM decision value 4.30
SVM RNA-class probability 0.999865
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9037262 116 - 22407834
UCCACCAAUCAAGCUUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA
...(((((....(((((.((((........(((((.....)))))....((((((....................)))))).............)))).)))))....)).))).. ( -25.05)
>DroSec_CAF1 31367 116 - 1
UUCUACAAUCAAGCUUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA
............(((((((((((((..((.....))..(((((((....((((((....................))))))..........)))))))))))).))))..)))).. ( -24.59)
>DroSim_CAF1 35170 116 - 1
UUCUACAAUCAAGCCUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA
............(((((((((((((..((.....))..(((((((....((((((....................))))))..........)))))))))))).))))..)))).. ( -27.29)
>DroEre_CAF1 33794 116 - 1
UCCUACAAUCAAGCUCGGUGUUUGCCAUCUCUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAGCUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA
.((((.......(((.(((....)))..........(((((((((....((((((....................))))))..........))))))))).))).....))))... ( -22.49)
>DroYak_CAF1 32211 116 - 1
UCCUACGACCAAACUCAAUGUUUACAAUCACUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGCAA
..........((((.....)))).............(((((((((....((((((....................))))))..........)))))))))..(((......))).. ( -21.39)
>consensus
UCCUACAAUCAAGCUUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA
............((((((.((((((..((.....))..(((((((....((((((....................))))))..........)))))))))))))....)))))).. (-22.61 = -22.33 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006