Locus 3156

Sequence ID 2L_DroMel_CAF1
Location 9,031,723 – 9,031,828
Length 105
Max. P 0.586603
window5019

overview

Window 9

Location 9,031,723 – 9,031,828
Length 105
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -44.12
Consensus MFE -24.56
Energy contribution -27.06
Covariance contribution 2.50
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.56
SVM decision value 0.11
SVM RNA-class probability 0.586603
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9031723 105 - 22407834
UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG-GGGGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAGUAAUUCUUCUGGGCAUA
..(((((...(((.((((..(((((((((.((.......))..-.))))))))--------)..))))))))))))(((.(((-((.(((.......))).)))....)).))). ( -45.00)
>DroSec_CAF1 25879 104 - 1
UCGCCCCACUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG-G-GGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAGGAAUUCUUCUGGGCAUA
.((((((...(((.((((..(((((((((.((.......))..-)-)))))))--------)..)))))))))))))..((((-.....)....(((((....))))).)))... ( -46.70)
>DroSim_CAF1 29607 105 - 1
UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG-GGGGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAGGAAUUCUUCUGGGCAUA
.((((((...(((.((((..(((((((((.((.......))..-.))))))))--------)..)))))))))))))..((((-.....)....(((((....))))).)))... ( -46.70)
>DroEre_CAF1 28345 102 - 1
UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAACGCUG---GGGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAUAAAUUCUUCUGGGCAU-
.((((((...(((.((((..(((((((((.((.......)).---))))))))--------)..)))))))))))))..((((-.....)....(((........))).)))..- ( -43.10)
>DroYak_CAF1 26706 106 - 1
UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCACUGGCGGGGGCGGC--------GGAUAGUGACGGGGCGGGGCCG-AAAUACAAAUGCAGCAACUCUACUGGGCAUA
((((((((((((((((....(((((((((.((.......))....))))))))--------)...))))))..))))))).))-).......((((..((.......)).)))). ( -48.80)
>DroPer_CAF1 29859 103 - 1
UCGCCCGGCUGUCGCUUAAAUGUCGCCCCGAGGA-GGCGCCAG---AGCCCGCCAAGGGUUGGUAAAGUGCAAGGCGUGGCAGCGAAUACAAAUGGG--AAAUCUGUUG------
...((((((((((((.........((((....).-)))(((..---(((((.....))))).((.....))..)))))))))))(....)...))))--..........------ ( -34.40)
>consensus
UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG_GGGGGCGGC________GGAUAGGGACGGGGCGUGGCCG_AAAUACAAAUGGAGGAAUUCUUCUGGGCAUA
.((((((((((((........((((((((.((.......))....)))))))).........)))))...)))))))..(((...........................)))... (-24.56 = -27.06 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:43 2006