Locus 3151

Sequence ID 2L_DroMel_CAF1
Location 8,993,449 – 8,993,545
Length 96
Max. P 0.915760
window5007

overview

Window 7

Location 8,993,449 – 8,993,545
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 82.47
Mean single sequence MFE -26.88
Consensus MFE -17.80
Energy contribution -19.05
Covariance contribution 1.25
Combinations/Pair 1.17
Mean z-score -2.27
Structure conservation index 0.66
SVM decision value 1.10
SVM RNA-class probability 0.915760
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8993449 96 + 22407834
AAGAACACAAGGAUCGCAGGAUUCUUCUUAAUUUUGAGCAAGAAGUCCUAUUGCAAACGGAGUAUUCAUAGAAUGCUCUUAGUCACGAUUUUGUUG
...((((...((((((.(((((((((((((....)))).))).)))))).........(((((((((...)))))))))......)))))))))). ( -23.90)
>DroSec_CAF1 37545 93 + 1
AUGAACACAAGGAUCGGAGGACUCUUCUUAAUUUUGAACAAGAAGUCCUGUUGAGAAGGGAGUAUUCAUAGAAUGCUCUUCACCGCGAGCUU---G
.......((((..(((..((...(((((((((...(.((.....)).).)))))))))(((((((((...)))))))))...)).))).)))---) ( -25.60)
>DroSim_CAF1 30957 95 + 1
AUGAAUCCAA-AAUCGGAGGACUCUUUUUAAUUUUGAGCAGGAAGUCCUGUUGAGAAGGGUGUAUUCAUAGAAUGCUCUUCGCCACGAUUUUGUUG
.......(((-(((((..((((((((((((.......(((((....)))))))))))))))((((((...))))))......)).))))))))... ( -28.71)
>DroYak_CAF1 56322 96 + 1
AUAAACCCAAGCAUCAGAGGACUCUUCUUAUUUCUGAGCAAGAAGUCCUGUGGCAAAUGGAAUAUUCACAGAAUGCUCUUCGCCACGAGUUUGUUG
.......(((((.((..(((((((((((((....)))).))).))))))(((((....(((.(((((...))))).)))..))))))))))))... ( -29.30)
>consensus
AUGAACACAAGGAUCGGAGGACUCUUCUUAAUUUUGAGCAAGAAGUCCUGUUGAAAAGGGAGUAUUCAUAGAAUGCUCUUCGCCACGAGUUUGUUG
.........(((((((.(((((((((((((....)))).))).)))))).........(((((((((...)))))))))......))))))).... (-17.80 = -19.05 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006