Locus 3148

Sequence ID 2L_DroMel_CAF1
Location 8,982,495 – 8,982,589
Length 94
Max. P 0.938422
window5001

overview

Window 1

Location 8,982,495 – 8,982,589
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 91.91
Mean single sequence MFE -21.16
Consensus MFE -18.74
Energy contribution -19.38
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.89
SVM decision value 1.29
SVM RNA-class probability 0.938422
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8982495 94 - 22407834
UAAAAUGCAGACUAAACAAGACACCAAAUUGUCUUGGCCACCAAAGUGGAUGGCUCACUGUUUGUUAACUGAAUUAGCCGCCCUCCUUCCCUCA
......((((((....(((((((......)))))))((((((.....)).)))).....))))))............................. ( -21.40)
>DroSec_CAF1 26780 94 - 1
UAAAAUGCAGACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAGUGGAUGGCUCAGAGUUUGUUAACUGAAUUAGCCGGCCUCCUUCGCUCA
......(((((((...(((((((......)))))))((((((.....)).))))....)))))))..............(((.......))).. ( -23.20)
>DroSim_CAF1 20089 94 - 1
UAAAAUGCAGACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAGUGGAUGGCUCAGAGUUUGUUAACUGAAUUAGCCGGCCUCCUUCCCUCA
......(((((((...(((((((......)))))))((((((.....)).))))....)))))))............................. ( -22.80)
>DroEre_CAF1 49245 94 - 1
UAAAAUACACACCAAACCAGACACCAAAAUGUCUUGGCCACCAAAGCGGAUGGCUCUGUGCUUGUUAACUGAAUUAGCUGGCCUGCUUCCCUCA
..................(((((......))))).(((((.....(((((....)))))(((.(((.....))).))))))))........... ( -18.10)
>DroYak_CAF1 44914 94 - 1
UAAAAUGCACACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAACGGAUGGCUCUGAGUUUGUUAACUGAAUUAGCUGCCCUCCUACCCUCA
......(((..((((.(((((((......)))))))((((((.....)).))))..(.((((....)))).).)))).)))............. ( -20.30)
>consensus
UAAAAUGCAGACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAGUGGAUGGCUCAGAGUUUGUUAACUGAAUUAGCCGGCCUCCUUCCCUCA
......((((((....(((((((......)))))))((((((.....)).)))).....))))))............................. (-18.74 = -19.38 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:27 2006