Locus 3147

Sequence ID	2L_DroMel_CAF1
Location	8,973,213 – 8,973,318
Length	105
Max. P	0.812191

overview

Window 9

Location	8,973,213 – 8,973,318
Length	105
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	84.31
Mean single sequence MFE	-35.45
Consensus MFE	-25.38
Energy contribution	-25.63
Covariance contribution	0.25
Combinations/Pair	1.14
Mean z-score	-3.09
Structure conservation index	0.72
SVM decision value	0.65
SVM RNA-class probability	0.812191
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8973213 105 + 22407834
AGA--------UAU-------CUUACCAUUGCCCAUUGCAUAUUGCUGGAGGAGAUCCAUCAUAUUGAUGUGCGUUACACCGCGUCGCUCCUGCAUGAAGGUAUCGCAAUGGGUGACCUU
...--------...-------.......(..(((((((((((((..((.(((((...((((.....)))).(((......)))....))))).))....))))).))))))))..).... ( -35.20)
>DroEre_CAF1 36752 110 + 1
AUAUGCU---AUAU-------CUUACCAUUGCCCAUUGCAUACUGCUGGAGGAGAUCCAUCAUAUUGAUGUGCGUUACGCCGCGUCGCUCCUGCAUGAAGGUAUCGCAAUGGGUGACCUU
.......---....-------.......(..(((((((((((((..((.(((((...((((.....)))).(((......)))....))))).))....))))).))))))))..).... ( -37.60)
>DroWil_CAF1 92361 107 + 1
AAAUC------CAA-------CUUACCAUUGCCCAUUGCGUAUUGUUGCAGCAGAUCCAUCAUAUUGAUGUGGAUGACUCCGCGUCUCUCCUGCAUAAAGGUAUCGCAAUGGGUAACUUU
.....------...-------.......((((((((((((((((..(((((.(((...........((((((((....))))))))))).)))))....)))).)))))))))))).... ( -39.40)
>DroYak_CAF1 35372 120 + 1
AAAUACUCGUAUAUACUCGUACUUACCAUUGCCCAUUGCAUAUUGCUGGAGGAGAUCCAUCAUAUUGAUGUGCGUUACGCCGCGUCGCUCCUGCAUGAAGGUAUCGCAAUGGGUGACCUU
........((((......))))......(..(((((((((((((..((.(((((...((((.....)))).(((......)))....))))).))....))))).))))))))..).... ( -36.50)
>DroMoj_CAF1 33055 101 + 1
------------CA-------CUUACCGUUUCCCAUUGCGUAUUGCUGCAGCAGAUCCAUCAUAUUGAUGUGCGUAACGCCGCGUCGCUCCUGCAUGAAUGUAUCGCAAUGGGUUACCUU
------------..-------......((..(((((((((...(((..((((((...((((.....)))).(((......))).......)))).))...))).)))))))))..))... ( -33.20)
>DroAna_CAF1 51704 105 + 1
UAA--------UAU-------CUUACCAUUGCCCAUUGCAUAUUGCUGAAGCAGAUCCAUCAUAUUGAUGUGCGUCACUCCGCGUCGCUCCUGCAUAAAAGUAUCGCAAUGGGUGACUUU
...--------...-------.......(..(((((((((((((......((((...((((.....)))).(((.(.......).)))..)))).....))))).))))))))..).... ( -30.80)
>consensus
AAA________UAU_______CUUACCAUUGCCCAUUGCAUAUUGCUGGAGCAGAUCCAUCAUAUUGAUGUGCGUUACGCCGCGUCGCUCCUGCAUGAAGGUAUCGCAAUGGGUGACCUU
............................((((((((((((((((..((.((.((...((((.....)))).(((......)))....)).)).))....))))).))))))))))).... (-25.38 = -25.63 +   0.25)

alignment

secondary structure

dotplot

Window 0

Location	8,973,213 – 8,973,318
Length	105
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	84.31
Mean single sequence MFE	-33.55
Consensus MFE	-26.43
Energy contribution	-26.65
Covariance contribution	0.22
Combinations/Pair	1.12
Mean z-score	-2.23
Structure conservation index	0.79
SVM decision value	0.55
SVM RNA-class probability	0.776998
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8973213 105 - 22407834
AAGGUCACCCAUUGCGAUACCUUCAUGCAGGAGCGACGCGGUGUAACGCACAUCAAUAUGAUGGAUCUCCUCCAGCAAUAUGCAAUGGGCAAUGGUAAG-------AUA--------UCU
.......((((((((((.....)).(((.((((.((.(((......))).((((.....))))....)))))).)))....))))))))..........-------...--------... ( -32.70)
>DroEre_CAF1 36752 110 - 1
AAGGUCACCCAUUGCGAUACCUUCAUGCAGGAGCGACGCGGCGUAACGCACAUCAAUAUGAUGGAUCUCCUCCAGCAGUAUGCAAUGGGCAAUGGUAAG-------AUAU---AGCAUAU
.......((((((((.((((.....(((.((((.((.(((......))).((((.....))))....)))))).)))))))))))))))..(((.((..-------...)---).))).. ( -34.20)
>DroWil_CAF1 92361 107 - 1
AAAGUUACCCAUUGCGAUACCUUUAUGCAGGAGAGACGCGGAGUCAUCCACAUCAAUAUGAUGGAUCUGCUGCAACAAUACGCAAUGGGCAAUGGUAAG-------UUG------GAUUU
.......(((((((((.........(((((.((((((.....))).(((((((....))).))))))).)))))......)))))))))((((.....)-------)))------..... ( -33.96)
>DroYak_CAF1 35372 120 - 1
AAGGUCACCCAUUGCGAUACCUUCAUGCAGGAGCGACGCGGCGUAACGCACAUCAAUAUGAUGGAUCUCCUCCAGCAAUAUGCAAUGGGCAAUGGUAAGUACGAGUAUAUACGAGUAUUU
.......((((((((((.....)).(((.((((.((.(((......))).((((.....))))....)))))).)))....)))))))).......((((((..((....))..)))))) ( -36.60)
>DroMoj_CAF1 33055 101 - 1
AAGGUAACCCAUUGCGAUACAUUCAUGCAGGAGCGACGCGGCGUUACGCACAUCAAUAUGAUGGAUCUGCUGCAGCAAUACGCAAUGGGAAACGGUAAG-------UG------------
...((..(((((((((.........(((((.((....(((......))).((((.....))))...)).)))))......)))))))))..))......-------..------------ ( -33.46)
>DroAna_CAF1 51704 105 - 1
AAAGUCACCCAUUGCGAUACUUUUAUGCAGGAGCGACGCGGAGUGACGCACAUCAAUAUGAUGGAUCUGCUUCAGCAAUAUGCAAUGGGCAAUGGUAAG-------AUA--------UUA
.......((((((((((.....)).(((.((((((..(((......))).((((.....))))....)))))).)))....))))))))..........-------...--------... ( -30.40)
>consensus
AAGGUCACCCAUUGCGAUACCUUCAUGCAGGAGCGACGCGGCGUAACGCACAUCAAUAUGAUGGAUCUCCUCCAGCAAUAUGCAAUGGGCAAUGGUAAG_______AUA________UUU
.......((((((((((.....)).(((.((((....(((......))).((((.....))))......)))).)))....))))))))............................... (-26.43 = -26.65 +   0.22)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:26 2006