| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,957,067 – 8,957,160 |
| Length | 93 |
| Max. P | 0.567848 |
| Location | 8,957,067 – 8,957,160 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -13.82 |
| Energy contribution | -13.95 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8957067 93 - 22407834 GUGUGUCGUUGUCAUGGGAAAGACCCGGGAAAACCUGACAAAGGAAAAUUGAAACC-GGCAAUAGUAUGCAGAAAUAGAAUGAAUGAGUAACAU (((((..((((((.((((.....))))......(((.....)))............-))))))..)))))........................ ( -18.70) >DroSec_CAF1 1406 93 - 1 GUGUGUCGUUGUCAUGGGAAAGACCCGGGAAAACCUGACAAAGGAAAAUGAAAACC-GGCAAUUGUAUGCAGAAAUAGAAUGAAUGAAGGAAAU (((((..((((((.((((.....))))......(((.....)))............-))))))..)))))........................ ( -17.70) >DroEre_CAF1 13954 89 - 1 UUGUGUCGUUGUCAUGGGAAAGACCCGGGAAAACCUGACAAAGAAAAAUUAAAACC-GGCAUUUGCAUACAGAAAUAGGAAUAAUG----GAAU (((((((.((((((.(((.....)))((.....)))))))).))............-.((....)).)))))..............----.... ( -15.80) >DroYak_CAF1 2976 90 - 1 GUGUGUCGUUGUCAUGGGAAACACCUGGGAAAACCUGACAAAGGAAAAUGAAAACGAAGCAAUUGUAUACAAAAAUAGAAAGAAAG----AAAU .(((.(((((.((((.(....).((((((....))).....)))...)))).))))).))).........................----.... ( -15.50) >consensus GUGUGUCGUUGUCAUGGGAAAGACCCGGGAAAACCUGACAAAGGAAAAUGAAAACC_GGCAAUUGUAUACAGAAAUAGAAAGAAUG____AAAU (((((..((((((..(((.....)))((.....))......................))))))..)))))........................ (-13.82 = -13.95 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:21 2006