Locus 3143

Sequence ID 2L_DroMel_CAF1
Location 8,945,046 – 8,945,164
Length 118
Max. P 0.953477
window4994

overview

Window 4

Location 8,945,046 – 8,945,164
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 71.19
Mean single sequence MFE -32.70
Consensus MFE -24.20
Energy contribution -22.77
Covariance contribution -1.43
Combinations/Pair 1.30
Mean z-score -1.35
Structure conservation index 0.74
SVM decision value 1.43
SVM RNA-class probability 0.953477
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8945046 118 - 22407834
GUGAAUGAACAUCCAU--AUUAAUUCAGUCUACAUUCUUCGCAGGUCGCUCAAACAAGCGAUCAUUUGUGUCCCUGAUUGUGGGCCUGAUCGUGGGCUUCUGCCUGGCGGAGCUGUUCGU
....(((((((.((((--......((((((((((.((..(((((((((((......)))))))...)))).....)).)))))).))))..))))(((.((((...)))))))))))))) ( -38.90)
>DroEre_CAF1 1523 116 - 1
---AAU-UACAUUUAUAAACUAAUUCAGCCAACAUUUUCCGCAGGGCGCUCAAACAAGCGAUCAUUUGUGUCCCUGAUCGUGGGCCUGAUCGUGGGCUUCUGCCUGGCGGAGCUGUUCGU
---...-....................((.((((..((((((.((((..........(((((((..........)))))))((((((......))))))..)))).)))))).)))).)) ( -33.30)
>DroWil_CAF1 58330 98 - 1
------------------UUUAUUUCUGUGUAUUUUU----UAGGGCGUUCCAAUAAACGAUCGUUUGUGUCCCUCAUUGUGGGACUGGUUGUAGGCUUUUGCCUGGCCGAACUGUUUGU
------------------...................----...(((...(((((((((....))))))(((((.......))))))))...(((((....))))))))........... ( -25.90)
>consensus
___AAU__ACAU__AU__AUUAAUUCAGUCUACAUUUU_CGCAGGGCGCUCAAACAAGCGAUCAUUUGUGUCCCUGAUUGUGGGCCUGAUCGUGGGCUUCUGCCUGGCGGAGCUGUUCGU
...........................................((((((((......(((((((.....(.(((.......))).))))))))((((....))))....)))).)))).. (-24.20 = -22.77 +  -1.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:20 2006