Locus 3141

Sequence ID 2L_DroMel_CAF1
Location 8,941,612 – 8,941,715
Length 103
Max. P 0.745262
window4991

overview

Window 1

Location 8,941,612 – 8,941,715
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -35.72
Consensus MFE -28.75
Energy contribution -29.83
Covariance contribution 1.09
Combinations/Pair 1.31
Mean z-score -1.07
Structure conservation index 0.80
SVM decision value 0.46
SVM RNA-class probability 0.745262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8941612 103 - 22407834
----AUCCCCGAGAGCUGUUAUAAGAUGUGGGGUGGUAGGUUCACCGAGGGGCCGCAUGAGGCUCUCCAUUCGCUGAAUAACAGCCUGCCCUACGAUUCUCGCCUCU
----.....((((((((......)).(((((((((((..(((((.(((((((((......))))))....))).)))))....))).)))))))).))))))..... ( -37.30)
>DroVir_CAF1 127302 104 - 1
CCAAAG---CCACAACUCCUAUAAGCUGUGGGGUGGACGUUUCAGUGAGAAGCCCAACGAGGCGUUGCAGGAGCUGAACAACAGUCUGCCCCAAGAUGCCCGCCUAU
......---(((((.((......)).)))))((((((((((((..((.......))..))))))).((((..((((.....))))))))..........)))))... ( -30.00)
>DroPse_CAF1 311005 103 - 1
----ACAUCCAAGAACUCAUAUCAAUUGUGGGGCGGACGCUUCAGCGAGAAGCCCAGUGAGGCUUUACAGGCUCUGAAUAUCAGUCUGCCUUACGACUCGCGUCUCU
----.......(((.............((((((((((((((((.....))))).(((...((((.....))))))).......)))))))))))(((....)))))) ( -31.90)
>DroSec_CAF1 152132 103 - 1
----AUCCCCGAGAGCUGCUAUAAGAUGUGGGGUGGUAGGUUCACCAAGGGGCCGCAUGAGGCUCUCCAUUCGCUUAAUAACAGCCUGCCCUACGAUUCCCGCCUCU
----......(((.((((.((((((..(((((((((.....)))))..((((((......))))))))))...))).))).))))........((.....)).))). ( -30.20)
>DroEre_CAF1 159595 103 - 1
----AUCCCCGAGAGCAGUUAUAAGAUGUGGGGUGGACGGUUCAGCGAGGGGCCGCACGAGGCCCUCCAGUCGCUGAAUAACAGCCUGCCCUACGAUUCCCGACUCU
----.......(((((.(..((....(((((((..(.(.(((((((((((((((......))))))....)))))))))....).)..)))))))))..).).)))) ( -42.40)
>DroYak_CAF1 156810 103 - 1
----AUCCCCGAGAGCAGCUAUAAGAUGUGGGGCGGACGGUUCAGCGAGGGGCCGCAUGAGGCCCUCCAGUCGCUCAACAACAGCCUGCCCUACGAUUCCCGCCUCU
----......(((.((...........(((((((((.(.(((.(((((((((((......))))))....))))).)))....).)))))))))(.....)))))). ( -42.50)
>consensus
____AUCCCCGAGAGCUGCUAUAAGAUGUGGGGUGGACGGUUCAGCGAGGGGCCGCAUGAGGCUCUCCAGUCGCUGAAUAACAGCCUGCCCUACGAUUCCCGCCUCU
..........................((((((((((.(.(((((((((((((((......))))))....)))))))))....).))))))))))............ (-28.75 = -29.83 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:17 2006