Locus 314

Sequence ID 2L_DroMel_CAF1
Location 900,268 – 900,388
Length 120
Max. P 0.956158
window499

overview

Window 9

Location 900,268 – 900,388
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.17
Mean single sequence MFE -39.68
Consensus MFE -37.66
Energy contribution -37.54
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.95
SVM decision value 1.46
SVM RNA-class probability 0.956158
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 900268 120 + 22407834
GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUGACCAUGAAGAACGUGGAGGUCAGCGACCUAACCACCUACUU
(((...((((..(((((((((.(((............)))...)))))))))..((.(((........))))))))).)))..........(((((((((...)))))..))))...... ( -37.70)
>DroSec_CAF1 28421 120 + 1
GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCUGGCGUGACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU
.....((((((((((((((((.(((............)))...))))))....(((((...)))))...)))))).))))(((((.....))))).((((((....))))))........ ( -39.80)
>DroSim_CAF1 24765 120 + 1
GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUGACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU
...((.((((..(((((((((.(((............)))...)))))))))..((.(((........))))))))))).(((((.....))))).((((((....))))))........ ( -40.90)
>DroEre_CAF1 31938 120 + 1
GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUCACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU
......((((..(((((((((.(((............)))...)))))))))..((.(((........)))))))))...(((((.....))))).((((((....))))))........ ( -39.70)
>DroYak_CAF1 28845 120 + 1
GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUCACCGUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU
.((((.((((..(((((((((.(((............)))...)))))))))..((.(((........)))))))))....((((...))))))))((((((....))))))........ ( -40.30)
>consensus
GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUGACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU
......((((..(((((((((.(((............)))...)))))))))..((.(((........)))))))))...(((((.....))))).((((((....))))))........ (-37.66 = -37.54 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:46 2006