Locus 3138

Sequence ID 2L_DroMel_CAF1
Location 8,926,602 – 8,926,692
Length 90
Max. P 0.878183
window4986

overview

Window 6

Location 8,926,602 – 8,926,692
Length 90
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.61
Mean single sequence MFE -38.77
Consensus MFE -22.56
Energy contribution -22.67
Covariance contribution 0.11
Combinations/Pair 1.16
Mean z-score -2.28
Structure conservation index 0.58
SVM decision value 0.90
SVM RNA-class probability 0.878183
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8926602 90 - 22407834
ACUCCACUCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG------GUGGUGGUGUGGG------AGCUGCUGGUAACGGCAGUGCCUCCAUUCACAUGAA
.(.(((.((((..(((((((.......))))))))))).))------).)((((((..((------.(((((((....))))))).))..)).))))..... ( -37.60)
>DroPse_CAF1 290571 96 - 1
AUUCCACUCGCUUCUGGGCACUACUCCGCUGAAGGUGACUGCUGCUAUUAGUGGUGCUGG------UGCUGGUGGUAGCUACAGUCCCGCCAUUCACAUGCA
.........((.....(((((((((..((...((....))...))....))))))))).(------((.((((((..((....)).))))))..)))..)). ( -31.40)
>DroSim_CAF1 135821 90 - 1
ACUCCACUCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG------GUGGUGGUGUGGG------AGGUGCUGGAAACGGCAGUGCCUCCAUUCACAUGAA
.(.(((((.((.((((((((.......)))))))).).).)------)))).)(((..((------((((((((....))))...))))))...)))..... ( -39.70)
>DroEre_CAF1 144607 90 - 1
ACUCCACGCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG------GUGGUGGUGUGGG------AGGUGCUGGAAACGGCAGUGCCUCCAUUCACAUGAA
.(.(((((((((....)))))..........(((....)))------)))).)(((..((------((((((((....))))...))))))...)))..... ( -42.10)
>DroYak_CAF1 141146 102 - 1
ACUCCACACGCUUCUGGGCGCUACCUUUGCCCAGGUGACUGCUGGUGGUGGUGGUGUGGGAGGAGGAGGUGCUGGCAACGGCAGUGCCUCCAUUCACAUGAA
.((((.((((((....)))((((((.(..(((((....)))..))..).)))))))))))))..(((((..(((.(...).)))..)))))........... ( -50.40)
>DroPer_CAF1 194140 96 - 1
AUUCCACUCGCUUCUGGGCACUACUCCGCUGAAGGUGACUGCUGCUAUUAGUGGUGCUGG------UGCUGGUGGUAGCUACAGUCCCGCCAUUCACAUGCA
.........((.....(((((((((..((...((....))...))....))))))))).(------((.((((((..((....)).))))))..)))..)). ( -31.40)
>consensus
ACUCCACUCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG______GUGGUGGUGUGGG______AGCUGCUGGUAACGGCAGUGCCUCCAUUCACAUGAA
..............(((((((((((......(((....)))........))))))))............(((((....)))))......))).......... (-22.56 = -22.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:12 2006