Locus 3133

Sequence ID 2L_DroMel_CAF1
Location 8,920,058 – 8,920,156
Length 98
Max. P 0.873848
window4978

overview

Window 8

Location 8,920,058 – 8,920,156
Length 98
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 73.58
Mean single sequence MFE -25.98
Consensus MFE -15.39
Energy contribution -16.23
Covariance contribution 0.83
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.59
SVM decision value 0.88
SVM RNA-class probability 0.873848
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8920058 98 - 22407834
UGCAUGUCGCCUUUUCUACCUUUUCUGGCUAUCCCG---------GCUUUUCUGGCUGGCAGUUCG----CACAGAUCGUCGGCAUAGACAUGCC--AAACCAUUGACUCUUU
.((((((((((...............)))(((.(((---------((...((((....((.....)----).))))..))))).)))))))))).--................ ( -28.56)
>DroPse_CAF1 282638 92 - 1
UGCAUGUCGCCUUUUCU---------GGCUAGGAUG---------GCUG-UAUGGCUGGCAGCUCUCACACACAGAUCGCCUGCAUAGACAUGCC--AAAGCGUUGACUCUUU
.((((((((((......---------)))...((.(---------((((-(.......)))))).)).....(((.....)))....))))))).--................ ( -26.10)
>DroEre_CAF1 137915 89 - 1
UGCAUGUCGCCUUUCCUACCUUUCCU------------------ACCUUUUCUGGCUGCCAGUUCG----CACAGAUCGUCGGCAUAGACAUGCC--AAACCAUUCACUCUUU
.((((((((((...............------------------.........)))((((.(.((.----....)).)...))))..))))))).--................ ( -19.56)
>DroYak_CAF1 134496 107 - 1
UGCAUGUCGCCUUUUCUACCUUUUCUGGCUCUCCCGGCUCUUCUGGCUUUUCUGGCUGGCAGUUCG----CACAGAUCGUCGGCAUAGACAUGCC--AAACCAUUGACUCUUU
.((((((((((...............)))....(((((...((((((....(((.....)))...)----).))))..)))))....))))))).--................ ( -30.26)
>DroAna_CAF1 132637 84 - 1
UGCAUGUCGCCUUUUG--GGUUUGCUGGC-----------------------UGCCUGGCAGCUCG----CACAGAUCGCCUUCAUAGACAUGCCACAAAGCGUUGACUCUUU
.((((((((((.....--))).(((.(((-----------------------(((...)))))).)----))...............)))))))................... ( -25.30)
>DroPer_CAF1 186201 92 - 1
UGCAUGUCGCCUUUUCU---------GGCUAGGAUG---------GCUG-UAUGGCUGGCAGCUCUCACACACAGAUCGCCUGCAUAGACAUGCC--AAAGCGUUGACUCUUU
.((((((((((......---------)))...((.(---------((((-(.......)))))).)).....(((.....)))....))))))).--................ ( -26.10)
>consensus
UGCAUGUCGCCUUUUCU_CCUUU_CUGGCUA____G_________GCUU_UCUGGCUGGCAGCUCG____CACAGAUCGCCGGCAUAGACAUGCC__AAACCAUUGACUCUUU
.((((((((((...............))).........................((.(((.(.((.........)).)))).))...)))))))................... (-15.39 = -16.23 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:05 2006