Locus 3131

Sequence ID 2L_DroMel_CAF1
Location 8,911,583 – 8,911,689
Length 106
Max. P 0.946120
window4975

overview

Window 5

Location 8,911,583 – 8,911,689
Length 106
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 74.89
Mean single sequence MFE -27.64
Consensus MFE -14.21
Energy contribution -14.24
Covariance contribution 0.03
Combinations/Pair 1.07
Mean z-score -2.17
Structure conservation index 0.51
SVM decision value 1.36
SVM RNA-class probability 0.946120
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8911583 106 - 22407834
UUUCCGCUACCUGCACCACAGGCACAGC-AUAUAAGUUAGUGCGUAUGCGUA--AUAUGC--AAACGAUGCGUAUGCGUAAUGUGCA-AUUUUAUAUCCAACUUGUGUAACA
.....(((.((((.....))))...)))-(((((((((.(..(((.((((((--.(((((--(.....)))))))))))))))..).-((.....))..))))))))).... ( -28.30)
>DroPse_CAF1 272753 91 - 1
UUUCCGCUAGCUGCACC--------------------CAUUGCGUAUGCUUUGCAUAUGCGUAUACGAUGCGUAUGCGUAAUGUGAA-AUUUUUGCACAAUCUUGCAUAAUC
...........((((..--------------------.((((.(((...((..(((.((((((((((...)))))))))))))..))-.....))).))))..))))..... ( -23.90)
>DroSec_CAF1 121815 101 - 1
UUUCCGCUACCUGCACCACAGGC------ACAUAAGUCAGUGCGUAUGCGUA--AUAUGC--AAACGAUGCGUAUGCGUAAUGUGGA-AUUUUAUAUCCAACUUGUGUAACA
.........((((.....)))).------((((((((((.((((((((((((--......--......)))))))))))).))((((-........)))))))))))).... ( -29.20)
>DroYak_CAF1 125766 106 - 1
UUUCCGCUACCUGCACAACGGGCACCAC-ACAUAAGUCAGUGCGUAUGCGUA--AUAUGC--AAACGAUGCGUAUGCGUAAUGUGCA-AUUUUAUAUCCAACUUGUGCAACA
...........(((((((.((((((.((-......))..))))(((((((((--.(((((--(.....)))))))))))...)))).-.........))...)))))))... ( -27.30)
>DroAna_CAF1 124453 102 - 1
UUUCCGCUACCUGCACUUCGCUCGCUGGCGA-----ACAGUGCGUAUGCGUA--AUAUGC--AUACGCUGCGUAUGCGUAAUGUGCA-AUUUUAUCACCAUCUUGCGCAAUC
....((((((..((((((((((....)))))-----..)))))))).)))..--.(((((--(((((...)))))))))).((((((-(.............)))))))... ( -34.42)
>DroPer_CAF1 175184 92 - 1
UUUCCGCUAGCUGCACC--------------------CAUUGCGUAUGCGUUGCAUAUGCGUAUACGAUGCGUAUGCGUAAUGUGAAAAUUUUUGCCCAAUCUUGCAUAAUC
((((.((.....))...--------------------(((((((((((((((((....)))........)))))))))))))).)))).....(((........)))..... ( -22.70)
>consensus
UUUCCGCUACCUGCACCAC_GGC______A______UCAGUGCGUAUGCGUA__AUAUGC__AAACGAUGCGUAUGCGUAAUGUGCA_AUUUUAUAUCCAACUUGCGUAACA
.....((.....)).......................((.(((((((((((..................))))))))))).))............................. (-14.21 = -14.24 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:02 2006