Locus 313

Sequence ID 2L_DroMel_CAF1
Location 900,068 – 900,188
Length 120
Max. P 0.500000
window498

overview

Window 8

Location 900,068 – 900,188
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.67
Mean single sequence MFE -39.38
Consensus MFE -38.30
Energy contribution -38.70
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.08
Structure conservation index 0.97
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 900068 120 + 22407834
AAACCCGAGGCCAUCGAGUUCAUUGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAU
........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... ( -40.60)
>DroSec_CAF1 28221 120 + 1
AAGCCCGAGGCCAUCGAUUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC
........(((((((...(((((.(((..((((.(((...))).))))...))))))))...))))......((((...((((((((........))))))))..))))..)))...... ( -37.10)
>DroSim_CAF1 24565 120 + 1
AAGCCCGAGGCCAUCGAGUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC
........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... ( -40.60)
>DroEre_CAF1 31738 120 + 1
AAGCCCGAGGCCAUCGAGUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC
........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... ( -40.60)
>DroYak_CAF1 28645 120 + 1
AAACCCGAGGCCAUCGAGUUCAUUGGCAACAUGCUGCAGGGCAACGUGGAUGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCCGACGCCGACUAC
........(((((((..((((((.((((.((((.(((...))).))))..))))))))))..))))........(((..((((((((........)))))))).....))))))...... ( -38.00)
>consensus
AAGCCCGAGGCCAUCGAGUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC
........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... (-38.30 = -38.70 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:45 2006