| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,908,191 – 8,908,282 |
| Length | 91 |
| Max. P | 0.724631 |
| Location | 8,908,191 – 8,908,282 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 90.79 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -16.64 |
| Energy contribution | -16.78 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8908191 91 + 22407834 CAUU----AAGUGCAACAAACGCCGCAGAGUUGCCCUUUGCGCUCGUUAUUUCGUUUUGUCCAGACAAACGAAACGC--AAAUUACGCAAAAAAAAA ....----...(((....((((.(((((((.....)))))))..))))((((((((((((........)))))))).--))))...)))........ ( -21.70) >DroSec_CAF1 118442 90 + 1 CAUU----AAGUGCAACAAACGCCGCAGAGUUGCCCUUUGCGCUCGUUAUUUCGUUUUGUCCAGACAAACGAAACGC--AAAUUACGCAAAA-AAAA ....----...(((....((((.(((((((.....)))))))..))))((((((((((((........)))))))).--))))...)))...-.... ( -21.70) >DroSim_CAF1 117377 89 + 1 CAUU----AAGUGCAACAAACGCCGCAGAGCUGCCCUUUGCGCUCGUUAUUUCGUUUUGUCCAGACAAACGAAACGC--AAAUUACGCAAAA--AAA ....----...(((....((((.(((((((.....)))))))..))))((((((((((((........)))))))).--))))...)))...--... ( -21.40) >DroEre_CAF1 125823 89 + 1 CAUU----AAGUGCAACAAAUGCCGCAGAGUUGCCCUUUGCGCUCGUUAUUUCGUUUUGUCCAGACAAACGAAACGC--AAAUUACGCAAAA--AAA ....----...(((.......((.((((((.....))))))))..((.((((((((((((........)))))))).--)))).)))))...--... ( -21.30) >DroYak_CAF1 122316 89 + 1 CAUU----AAGUGCAACAAAUGCCGCAGAGCUGCCCUUUGCGCUCGUUAUUUCGUUUUGUCCAGACAAAUAAAACGC--AAAUUACGCAAAA--AAA ....----..(.(((.....))))((.((((.((.....))))))((.((((((((((((........)))))))).--)))).))))....--... ( -19.60) >DroAna_CAF1 121312 93 + 1 CGUUUCGGCUGUGCAACA-ACACCAAAGAGUUGCCCUUUGAGCUCGUUAUUUCGUUUUGUCCAGACAAACAAAACCAAAAAAUUACGCAAAA--AA- ......((.(((......-)))))...(((((........)))))....(((.(((((((........))))))).))).............--..- ( -13.70) >consensus CAUU____AAGUGCAACAAACGCCGCAGAGUUGCCCUUUGCGCUCGUUAUUUCGUUUUGUCCAGACAAACGAAACGC__AAAUUACGCAAAA__AAA ...........(((.........(((((((.....)))))))...((.((((((((((((........))))))))...)))).)))))........ (-16.64 = -16.78 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:58 2006