| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,900,122 – 8,900,228 |
| Length | 106 |
| Max. P | 0.510608 |
| Location | 8,900,122 – 8,900,228 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -15.18 |
| Energy contribution | -15.43 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8900122 106 - 22407834 CGAAAUGACUUCGGAAAUCAUUAUUAUAAUUAUGGGAAUGGUUUUCGAGCAUAAAAGAGAAUGUAUUUCUUUCAUUUGCAAUGUUUUU-UAGGUUUGAAUAAGAAAU ..........((((((((((((.((((....)))).))))))))))))(((....((((((.....))))))....)))...((((((-((........)))))))) ( -22.40) >DroSec_CAF1 110295 107 - 1 CGAAAUGACUUCGGAAAUCAUUAUUAUAAUUAUGGGAAUGGUUUCCGAGAAUAAAAGAGAAUGUAUUUCUUUUAUUUGCAAUGUUUUUUUCGAUUUGAAUAAGAAAC (((((.(((.((((((((((((.((((....)))).))))))))))))((((((((((((.....)))))))))))).....)))..)))))............... ( -29.60) >DroSim_CAF1 108914 88 - 1 CGAAAUGACUUCGGAAAUCAUUAUUAUAAUUAUGGGAAUGGUUUCCGAGCAUAAAAGAGAAUGUAUUUCUUUCAUUUGCAAUGUUUUU------------------- .(((((....((((((((((((.((((....)))).))))))))))))(((....((((((.....))))))....)))...))))).------------------- ( -23.00) >DroEre_CAF1 117375 105 - 1 CGAAAUGACUUCGGAAAUCAUUAUUAUAAUUAUGGGAUUGGUUUCCUAGCAUAAAAGAGAAUGUAU-UCUUUCAUUUGCAAUGUUUCU-CAGUUUUGAAUAAGAAAU .(((((......((((((((...((((....))))...))))))))..(((....((((((....)-)))))....)))...))))).-.................. ( -19.20) >DroYak_CAF1 113819 106 - 1 CGAAAUGACUUCGGAAAUCAUAAUUAUAAUUAUGGGAAUGGUUUCUAGGCAUAAAAGAGAAUGUAUUUCUUUCUUUUGCAAUGUUUCU-CAGUUUUGAAUAAGAAAU .(((((......(((((((((..((((....))))..)))))))))..(((.((.((((((.....)))))).)).)))...))))).-.................. ( -19.50) >DroAna_CAF1 112924 104 - 1 AGAAAUGGGUUCGGAAAUCAUAAUUAUAAUCAUGGGAAUGACUUCUUGAAGUAAAAGAGAAUGUAUUUCUUUCAUUUGUAAUGUUUGC-CAGCUUUC-AUAAC-AAU (((((((.((((.................((((....))))..((((.......)))))))).))))))).....((((.(((...(.-...)...)-)).))-)). ( -16.70) >consensus CGAAAUGACUUCGGAAAUCAUUAUUAUAAUUAUGGGAAUGGUUUCCGAGCAUAAAAGAGAAUGUAUUUCUUUCAUUUGCAAUGUUUUU_CAGUUUUGAAUAAGAAAU .(((((......((((((((((.((((....)))).))))))))))..(((....((((((.....))))))....)))...))))).................... (-15.18 = -15.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:57 2006