| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,897,085 – 8,897,201 |
| Length | 116 |
| Max. P | 0.705521 |
| Location | 8,897,085 – 8,897,201 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -4.78 |
| Energy contribution | -6.66 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8897085 116 - 22407834 GGGCUUAAGCAUAUUUAUUCACCUGGUCACAAAGGGAAUA----AAAUUGCUUGAGUAAUUAUUUUUAAUUUCCUACUAAUAAACCAUUUAUUCGUGAACACAAGUUCAAAUGCCAAUGA (((((((((((..(((((((.(((........))))))))----))..)))))))))(((((....))))).))...........((((......(((((....)))))......)))). ( -28.30) >DroSec_CAF1 107253 116 - 1 UGGCUGAAGCAUAUUAUUAAACCUGGUCACAAAGGGAAUC----AAAUUGGUUGAGUAAUUAUGUUUAAUUUCUUACAAAUAAGCCAUUUAUUCAUGAAUACAAGUUCAAAAGCCAAUGA (((((.((((((((((((.((((((((..(....)..)))----)....)))).))))).)))))))............................(((((....)))))..))))).... ( -21.70) >DroSim_CAF1 105884 116 - 1 GGGCUUAGGCAUUUUAUUAAACCUAGUCACAAAGGGAAUA----AAAUUACUUGAGUAAUUCUAUUUAAUUUUCGACUAAUAAACCAUUUAUUCGUGAACAUAAGUUCAAAAGCCAAUGC .(((((.................(((((..(((..(((((----.((((((....)))))).)))))..)))..)))))................(((((....))))).)))))..... ( -24.00) >DroEre_CAF1 111672 120 - 1 UGGCCAAGGCAUAUUAUUAAAACUUGACGAAGUCGGAAAAAAUGGGAUUGGUUGAGUAGUUAGGUUUUAUUUCCUACUAAUAAACUGUUUAUUUGCUAAUACAAGUUCAAAUGGCAAUGA ..(((((((((..((((((..(((..((..((((...........)))).))..)))...((((........)))).))))))..)))))(((((......))))).....))))..... ( -21.90) >DroYak_CAF1 110795 110 - 1 UGGCCAAGGCUUAUUAUUAAAGCUGGCCAAAGUGGAAAAA----------UUUGAGUCUUUAUGUUUUAUUUCCUACUUAUAAAGCGUUUAUUUGAUAAUACAAGUUCAAAUGCCAAUGA ((((((..((((.......))))))))))...(((....(----------(((((......(((((((((.........)))))))))..(((((......))))))))))).))).... ( -24.40) >consensus UGGCUAAGGCAUAUUAUUAAACCUGGUCACAAAGGGAAUA____AAAUUGCUUGAGUAAUUAUGUUUAAUUUCCUACUAAUAAACCAUUUAUUCGUGAAUACAAGUUCAAAUGCCAAUGA .(((.............................((((((......((((((....)))))).......)))))).....................(((((....)))))...)))..... ( -4.78 = -6.66 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:56 2006