| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,879,449 – 8,879,544 |
| Length | 95 |
| Max. P | 0.591972 |
| Location | 8,879,449 – 8,879,544 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.99 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -19.06 |
| Energy contribution | -18.87 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8879449 95 - 22407834 --CGCCGCGCCGUAUGGCUUCGCUUCGCUUUGGUACAUAUUUCAUCGAUUCAUUUUAAAGAUGAAGUUAUGAACGCCAAAGCACCACAA----------AAAGUUCG --.((...(((....)))...))...((((((((.(((((((((((.............))))))).))))...)))))))).......----------........ ( -25.92) >DroSec_CAF1 89595 95 - 1 --CGUCGCGCCGUAUCGCUUCGCUUCGCUUUGGUACUUAUUUCAUCGAUUCAUUUUAAAGAUGAAGUUAUGAACGCCAAAGCACCACAA----------AAAAAUCG --((..(((......)))..))....((((((((....((((((((.............)))))))).......)))))))).......----------........ ( -22.02) >DroSim_CAF1 88024 95 - 1 --CGCCGCGCCGUAUCGCUUCGCUUCGCUUUGGUACAUAUUUCAUCGAUUCAUUUUAAAGAUGAAGUUAUGAACGCCAAAGCACCACAA----------AAAAAUCG --.((.(((......)))...))...((((((((.(((((((((((.............))))))).))))...)))))))).......----------........ ( -23.92) >DroEre_CAF1 94067 95 - 1 --CGCCUCGCCGUAUCGGUUCGCUUCGCUUUGGUACAUAUUUCAUCGAUUCAUUUGAAAGAUGAAGUUAUGAACGCCGAGGCCCCACAA----------AAAAUUCG --.((((((.((((((((..((...))..))))).(((((((((((..(((....))).))))))).)))).))).)))))).......----------........ ( -26.80) >DroYak_CAF1 92576 107 - 1 CUCGCCUCGCCGCAUCGCUUCGCUUCGCUUUGGUACAUAUUUCAUCGAUUCAUUUUAAAGAUGAAGUUAUGAACGCCGAAGCCCCACCAAAAAAAAGAAAAAAAUCG .((((...((......))...))...((((((((.(((((((((((.............))))))).))))...))))))))..............))......... ( -21.52) >DroAna_CAF1 92046 85 - 1 --CGCCGCGGCAGAU-----CGCUUCGUUUUGGUACAUAUUUCAUCGAUUCAUUUUAAAGAUGAAGUUAUGAACGCCGUAGCCCCACAA----------AAA----- --.((..((((.((.-----....))......((.(((((((((((.............))))))).)))).))))))..)).......----------...----- ( -22.52) >consensus __CGCCGCGCCGUAUCGCUUCGCUUCGCUUUGGUACAUAUUUCAUCGAUUCAUUUUAAAGAUGAAGUUAUGAACGCCAAAGCACCACAA__________AAAAAUCG ..........................((((((((.(((((((((((.............))))))).))))...))))))))......................... (-19.06 = -18.87 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:48 2006