Locus 3120

Sequence ID 2L_DroMel_CAF1
Location 8,876,450 – 8,876,541
Length 91
Max. P 0.622897
window4960

overview

Window 0

Location 8,876,450 – 8,876,541
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 96.42
Mean single sequence MFE -24.22
Consensus MFE -20.04
Energy contribution -19.98
Covariance contribution -0.05
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.83
SVM decision value 0.18
SVM RNA-class probability 0.622897
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8876450 91 + 22407834
GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC
(((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40)
>DroSec_CAF1 86583 91 + 1
GCACUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC
.....(((-(((((.....(((((.....)))))......((((((....))))))))))).((((((.........))))))......))) ( -19.00)
>DroSim_CAF1 85029 91 + 1
GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC
(((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40)
>DroEre_CAF1 90919 91 + 1
GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC
(((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40)
>DroYak_CAF1 89383 91 + 1
GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC
(((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40)
>DroAna_CAF1 89027 92 + 1
UCUCUGCCCCACGAAUUGUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUCGGUUUGUCAGCCGGACGAAAGCUGAUUUAUGGGGC
.....(((((.....(((.(((((.....)))))))).((((((((........((((((......))))))(....).))))))))))))) ( -28.70)
>consensus
GCCCUGCC_GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC
(((((..............(((((.....)))))....((((((((........((((((......))))))(....).))))))))))))) (-20.04 = -19.98 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:48 2006