Locus 3119

Sequence ID 2L_DroMel_CAF1
Location 8,871,975 – 8,872,068
Length 93
Max. P 0.951815
window4959

overview

Window 9

Location 8,871,975 – 8,872,068
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 77.36
Mean single sequence MFE -26.10
Consensus MFE -17.09
Energy contribution -19.38
Covariance contribution 2.29
Combinations/Pair 1.11
Mean z-score -2.04
Structure conservation index 0.65
SVM decision value 1.42
SVM RNA-class probability 0.951815
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8871975 93 + 22407834
AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU-UUUAAACCC
...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))...-......... ( -32.00)
>DroSec_CAF1 82170 93 + 1
AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU-UUUAAACCC
...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))...-......... ( -32.00)
>DroSim_CAF1 80635 93 + 1
AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU-UUUAAACCC
...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))...-......... ( -32.00)
>DroEre_CAF1 86596 79 + 1
CUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUU----UUUAU---------ACUUU--UUUUAACCC
.......(((.((..(((.......)))..)).)))(((((((.(......).)))))))----.....---------.....--......... ( -17.40)
>DroYak_CAF1 84799 94 + 1
CUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUUUUUUAAACCC
...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))............. ( -32.00)
>DroAna_CAF1 84618 76 + 1
------CUUGGUAUAUGGAAUUACAACGCACCAGGA------ACAACCUAA----CUCUUUGAUUUCAUUUUCAAGACACUCGG-ACUCAACC-
------(((((...(((((((((.........(((.------....)))..----.....)))))))))..)))))........-........- ( -11.19)
>consensus
AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU_UUUAAACCC
..........((((((((......(((......)))(((((((.(......).))))))).....))))))))..................... (-17.09 = -19.38 +   2.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:46 2006