Locus 3117

Sequence ID 2L_DroMel_CAF1
Location 8,864,421 – 8,864,541
Length 120
Max. P 0.522788
window4956

overview

Window 6

Location 8,864,421 – 8,864,541
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.89
Mean single sequence MFE -38.35
Consensus MFE -22.78
Energy contribution -22.63
Covariance contribution -0.16
Combinations/Pair 1.47
Mean z-score -1.50
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.522788
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8864421 120 + 22407834
AUUCAGGCGCAGUUCAACCAUGGCCGUCUGAACGUCGUGGAAGUGGUUCCCGAAGAGCACCUCAUGGUCUGCACCCUGACUUUAUACUUGCAUUCAAUGAUGUUCUUCUUCUGCGUGUGC
...((.((((((...((((((..(((.(........))))..))))))...((((((((..((((.(..((((...............))))..).))))))))))))..)))))).)). ( -36.16)
>DroSim_CAF1 73162 120 + 1
AUUCAGGCGCAGUUCAACCACGGCCGGCUGGACGUCGUGGAAGUGGUUCCCGAAGAGCACCUCAUGGUCUGCACCCUGACCUUAUACUUGCACUCAAUGAUGUUCUUCUUCUGCGUGUGC
...((.((((((...((((((..(((((.....)))..))..))))))...((((((((..((((.(..((((...............))))..).))))))))))))..)))))).)). ( -38.26)
>DroEre_CAF1 78925 120 + 1
AUCCAGGCGCAGUUCAACCACGGUCGCCUGAACAUCGUGGAGGUGGUUCCCGAGGAGCACCUCAUGGUCUGCACCCUGACCUUGUACCUGCACUCCAUGAUGUUCUUCUGCUGCGUAUGC
...((.(((((((...((....)).....((((((((((((((((((....((((....))))..((((........))))....))).)).)))))))))))))....))))))).)). ( -46.80)
>DroWil_CAF1 124515 120 + 1
AUUCAGGCGCAAUUCAAUCAUGGGCGGAUGAUCAUUGUCGAGGUAGUUCCAAAGAAUCAUUUGAUUAUCUGCAUUCUUACGCUGUACUUGCAUUCCGUCAUGUUCUUUUGUUGUCUGUGC
...(((((((((......((((((((((((((((...((..((.....))...))......)))))))))))........((.......))......))))).....))).))))))... ( -30.70)
>DroYak_CAF1 76871 120 + 1
AUCCAGGCGCAGCUCAACCACUGCCGCCUGGACACCGUGGAGAUUGUUCCCAAGGAGCACCUCAUGGUCUGCACCCUGACCUUAUACCUGCACUCCAUGAUCUUCUUCUUCUGCGUGUGC
.(((((((((((........))).))))))))(((((..(((..((((((...))))))..((((((..((((...............))))..))))))........)))..)).))). ( -45.56)
>DroAna_CAF1 76341 120 + 1
AUCCAGGCGCAGUUUAACCAUGGCCGGCUGGAUGCCAUCGAAUUGGUGCCGCAGCAACACCUCGUUGUCUGCGCCCUGACCGUCUACCUGCACACCGUAAUGUUCUUCAGCUGCAUAUGC
...(((((((((..((((...((...(((((..((((......))))..).))))....))..)))).))))).))))...........(((....(((.((.....))..)))...))) ( -32.60)
>consensus
AUCCAGGCGCAGUUCAACCACGGCCGGCUGAACAUCGUGGAAGUGGUUCCCGAGGAGCACCUCAUGGUCUGCACCCUGACCUUAUACCUGCACUCCAUGAUGUUCUUCUGCUGCGUGUGC
...((.((((((.....(((((((.........)))))))...........((((((((..((((.(..((((...............))))..).))))))))))))..)))))).)). (-22.78 = -22.63 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:43 2006