Locus 3115

Sequence ID 2L_DroMel_CAF1
Location 8,861,094 – 8,861,200
Length 106
Max. P 0.785373
window4952

overview

Window 2

Location 8,861,094 – 8,861,200
Length 106
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 79.85
Mean single sequence MFE -24.48
Consensus MFE -18.90
Energy contribution -18.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.77
SVM decision value 0.57
SVM RNA-class probability 0.785373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8861094 106 + 22407834
CC----CCCGUCGCCC----CACCAACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUC----AGAGAC
..----..........----......((...((((.((......))(((....(((....)))...........((((.....)))).)))..............)))----).)).. ( -23.50)
>DroVir_CAF1 16931 94 + 1
-------UCUGCUGCC----UACUCGCUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACUGCC---------GC----UGCCAC
-------...((.((.----................((......))(((....(((....)))...........((((.....)))).)))...)).---------))----...... ( -21.50)
>DroPse_CAF1 92622 110 + 1
UC----CCUAUCCCCACAUACACACACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAUUCAGUC----AGCCAG
..----.........................((((.((......))(((....(((....)))...........((((.....)))).)))..............)))----)..... ( -22.30)
>DroEre_CAF1 75498 110 + 1
CCGCCGCCCUUCGCCC----CACCGACUGAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUC----AGAGGC
..(((.....(((...----...)))((((.((((.((......))(((....(((....)))...........((((.....)))).)))..........)))).))----)).))) ( -32.80)
>DroAna_CAF1 73024 114 + 1
CCGCCACCCCCUCUCC----AGUAAACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUCAGUCAGAGUC
..........((((..----.....(((...((((.((......))(((....(((....)))...........((((.....)))).)))..........))))...))).)))).. ( -24.50)
>DroPer_CAF1 94454 110 + 1
UC----CCUAUCCCCACAUACAUACACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAUUCAGUC----AGCCAG
..----.........................((((.((......))(((....(((....)))...........((((.....)))).)))..............)))----)..... ( -22.30)
>consensus
CC____CCCAUCCCCC____CACACACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUC____AGACAC
..............................................(((....(((....)))...........((((.....)))).)))........................... (-18.90 = -18.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006