| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,845,473 – 8,845,575 |
| Length | 102 |
| Max. P | 0.988655 |
| Location | 8,845,473 – 8,845,575 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.12 |
| Mean single sequence MFE | -35.22 |
| Consensus MFE | -25.47 |
| Energy contribution | -26.27 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.72 |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.988655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8845473 102 + 22407834 GUGCACCUUGGCAACGGGCAAUACGGUUCCCAUAAGUUAGCUAAAAAGCACUGAGAGGGCUCUAUGCUUAAGGGGGUGAAUGCCUGUGGG--UAGGUGCUAACC ..((((((..((.(((((((.(...(..(((.((((((((......(((.((....)))))))).))))).)))..).).)))))))..)--)))))))..... ( -37.10) >DroSec_CAF1 55607 93 + 1 GUGCACCUUGGCAACGGGCAAUACGGUCCCCAUAAGUUGGCUAAAAAGCG-----------CUAUGCUUAAGGGGGUGAAUGCCUGUGGGUGUAGGUACUAACC .(((((((.....(((((((......(((((.(((((((((........)-----------))).))))).)))))....))))))))))))))(((....))) ( -35.10) >DroSim_CAF1 54176 91 + 1 UUGCACCUUGGCAACGGGCAAUACGGUCCCCAUAAGUUGGCUAAAAAGCG-----------CUAUGCUUAAGGGGGUGAAUGCCUGUGGG--UAGGUGCUAACC ..((((((..((.(((((((......(((((.(((((((((........)-----------))).))))).)))))....)))))))..)--)))))))..... ( -37.60) >DroEre_CAF1 58341 89 + 1 GUGCACCUUGGCAACGGGCAAUAAGGUCCCCGUAAGUUGGCUAAAAAGCA-------------CUGCAAAGGGGGGUGAAUGCCUGUGGG--UAGGUGCUAACC ..((((((..((.(((((((....(.(((((....((..(((....))).-------------..))...))))).)...)))))))..)--)))))))..... ( -35.20) >DroYak_CAF1 57275 83 + 1 GUGCACCUUGGCAACGGGCAAUAAGGUUCCCAUAAGUUGGCU------CU-------------CGGCAAAAGGGGGUAAAUACUUGUGGG--UAGGUGCUAACC ..((((((((....))............(((((((((..(((------((-------------(.......))))))....)))))))))--.))))))..... ( -31.10) >consensus GUGCACCUUGGCAACGGGCAAUACGGUCCCCAUAAGUUGGCUAAAAAGCA___________CUAUGCUUAAGGGGGUGAAUGCCUGUGGG__UAGGUGCUAACC ..((((((.....(((((((......(((((.(((((............................))))).)))))....)))))))......))))))..... (-25.47 = -26.27 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:35 2006