| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 892,993 – 893,098 |
| Length | 105 |
| Max. P | 0.945181 |
| Location | 892,993 – 893,098 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 86.08 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -17.75 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.945181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 892993 105 + 22407834 UCCCUCCCACCCUCCCUCCUUUGUAAUAUGCCAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC .........................................((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -19.10) >DroSec_CAF1 21244 95 + 1 ----------CCUUCCUCCCUGGUAAUAUGCCACAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ----------..........((((.....))))........((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -22.00) >DroSim_CAF1 17446 98 + 1 UCC-------CCUUCCUCCCUGGUAAUAUGCCAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ...-------..........((((.....))))........((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -22.10) >DroEre_CAF1 24681 99 + 1 UCC-----GCCUGCCCCUGUUGGUAAUAUACAAUAUU-UCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ...-----(((.((....)).))).............-...((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -22.00) >DroYak_CAF1 21279 100 + 1 GCC-----GCUCCCCCUUGGUGGUAAUAUACAAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ((.-----((((......(((((.(((((...)))))..))))).......(((((((....((((((((............)))))))).))))))))))).)) ( -27.40) >DroAna_CAF1 22536 90 + 1 -----------CC----CCCCAGUAAUAUACAAUAUUUUCCUAUUUCUUUUUGCACAGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC -----------..----...............................((((((((......((((((((............))))))))...)))))))).... ( -14.50) >consensus UCC_______CCUCCCUCCCUGGUAAUAUACAAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ................................................((((((((((....((((((((............)))))))).)))))))))).... (-17.75 = -17.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:40 2006