Locus 3104

Sequence ID 2L_DroMel_CAF1
Location 8,822,329 – 8,822,428
Length 99
Max. P 0.875360
window4938

overview

Window 8

Location 8,822,329 – 8,822,428
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.23
Mean single sequence MFE -20.98
Consensus MFE -17.66
Energy contribution -17.93
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -2.28
Structure conservation index 0.84
SVM decision value 0.89
SVM RNA-class probability 0.875360
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8822329 99 - 22407834
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUACGCGUUGUGG---------------------
......................((((..........((((((((..(((((((............)))))))..))))))))............)))).--------------------- ( -17.95)
>DroPse_CAF1 47842 120 - 1
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUGUGCGUUUUGCUGUAUGCUGUGUGGCUUCUGC
.....((((.............(((((.........((((((((..(((((((............)))))))..))))))))....)))))......((..(((...)))..)).)))). ( -23.82)
>DroWil_CAF1 70669 99 - 1
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG---------------------
......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...)))).--------------------- ( -20.10)
>DroYak_CAF1 33131 99 - 1
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG---------------------
......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...)))).--------------------- ( -20.10)
>DroAna_CAF1 32345 99 - 1
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG---------------------
......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...)))).--------------------- ( -20.10)
>DroPer_CAF1 48283 120 - 1
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUGUGCGUUUUGCUGUAUGCUGUGUGGCUUCUGC
.....((((.............(((((.........((((((((..(((((((............)))))))..))))))))....)))))......((..(((...)))..)).)))). ( -23.82)
>consensus
CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG_____________________
......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...))))...................... (-17.66 = -17.93 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:26 2006