Locus 3103

Sequence ID 2L_DroMel_CAF1
Location 8,821,317 – 8,821,410
Length 93
Max. P 0.611098
window4937

overview

Window 7

Location 8,821,317 – 8,821,410
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -22.98
Consensus MFE -21.86
Energy contribution -21.91
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -1.08
Structure conservation index 0.95
SVM decision value 0.16
SVM RNA-class probability 0.611098
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8821317 93 - 22407834
GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG---------ACAGGAC
(((.(((.((((((((..((.....))..))))))))..(((((((.................)))))))........)))....)---------))..... ( -22.23)
>DroSec_CAF1 29483 93 - 1
GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG---------ACAGGAC
(((.(((.((((((((..((.....))..))))))))..(((((((.................)))))))........)))....)---------))..... ( -22.23)
>DroSim_CAF1 29311 93 - 1
GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG---------ACAGGAC
(((.(((.((((((((..((.....))..))))))))..(((((((.................)))))))........)))....)---------))..... ( -22.23)
>DroEre_CAF1 34009 84 - 1
GUCAUUGAACUUAUUUCGCCGUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCCAGACGGCGCAG------------------GAC
(((.....((((((((..((.....))..))))))))..(((((((.................))))))).))).......------------------... ( -25.23)
>DroYak_CAF1 32037 102 - 1
GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGGACAGCAGGGACAGGAC
(((.....((((((((..((.....))..))))))))..(((((((.................))))))).)))...((.(......).))........... ( -23.23)
>DroAna_CAF1 31272 88 - 1
GUCAUUGAACUCAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCACCGGAAUAUGAAUGAGCGGGACGGCUAGACAGAGGAAGCG--------------GGAU
(((.....((((((((..((.....))..))))))))..((((.(((.............)))...)))).)))..........--------------.... ( -22.72)
>consensus
GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG_________ACAGGAC
(((.....((((((((..((.....))..))))))))..(((((((.................))))))).)))............................ (-21.86 = -21.91 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006