Locus 3101

Sequence ID 2L_DroMel_CAF1
Location 8,818,056 – 8,818,151
Length 95
Max. P 0.981051
window4934 window4935

overview

Window 4

Location 8,818,056 – 8,818,151
Length 95
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 92.27
Mean single sequence MFE -22.39
Consensus MFE -21.81
Energy contribution -21.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.97
SVM decision value 1.88
SVM RNA-class probability 0.981051
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8818056 95 + 22407834
GAUCUAAUUGCAGAACGGGGCAACCUUUUUCUCCUUCCCAACUCGUAUUUU-----UUUUU---UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC
....(((((((((..((((((..............................-----.....---...........))))))....)))))))))......... ( -21.45)
>DroSec_CAF1 26232 103 + 1
GAUCUAAUUGCAGAACGGGGCGACCUUUUUCUCCUUCCCUACUCGUAUUUUACUUAUUUUUUUUUUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC
....(((((((((..((((((((......)).............(((...)))......................))))))....)))))))))......... ( -22.90)
>DroSim_CAF1 26024 100 + 1
GAUCUAAUUGCAGAACGGGGCGACCUUUUUCUCCUUCCCUACUCGUAUUUUACUUAUUUUU---UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC
....(((((((((..((((((((......)).............(((...)))........---...........))))))....)))))))))......... ( -22.90)
>DroEre_CAF1 30755 98 + 1
GAUCUAAUUGCAGAACGGGGCGACCUU-UUCUCCUCCCCUACUUGUUUUUUC-UUUUUUUU---UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC
....(((((((((...((((.(.....-.....).)))).............-........---....(((((.......))))))))))))))......... ( -22.30)
>consensus
GAUCUAAUUGCAGAACGGGGCGACCUUUUUCUCCUUCCCUACUCGUAUUUUA_UUAUUUUU___UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC
....(((((((((..((((((......................................................))))))....)))))))))......... (-21.81 = -21.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 8,818,056 – 8,818,151
Length 95
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 92.27
Mean single sequence MFE -24.61
Consensus MFE -23.76
Energy contribution -23.57
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.97
SVM decision value 1.25
SVM RNA-class probability 0.935934
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8818056 95 - 22407834
GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA---AAAAA-----AAAAUACGAGUUGGGAAGGAGAAAAAGGUUGCCCCGUUCUGCAAUUAGAUC
.......(((((((((((....((((((...((......---.....-----..(((....)))...............)).))))))..))))))))))).. ( -23.39)
>DroSec_CAF1 26232 103 - 1
GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAAAAAAAAAAUAAGUAAAAUACGAGUAGGGAAGGAGAAAAAGGUCGCCCCGUUCUGCAAUUAGAUC
.......(((((((((((....((((((..(((..............((.(((...)))...))...............)))))))))..))))))))))).. ( -25.45)
>DroSim_CAF1 26024 100 - 1
GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA---AAAAAUAAGUAAAAUACGAGUAGGGAAGGAGAAAAAGGUCGCCCCGUUCUGCAAUUAGAUC
.......(((((((((((....((((((...........---........(((...))).............((......))))))))..))))))))))).. ( -24.80)
>DroEre_CAF1 30755 98 - 1
GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA---AAAAAAAA-GAAAAAACAAGUAGGGGAGGAGAA-AAGGUCGCCCCGUUCUGCAAUUAGAUC
.......(((((((((((.((((.......)))......---........-.............((((.((....-....)).)))))..))))))))))).. ( -24.80)
>consensus
GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA___AAAAAUAA_UAAAAUACGAGUAGGGAAGGAGAAAAAGGUCGCCCCGUUCUGCAAUUAGAUC
.......(((((((((((....((((((..(((..............................................)))))))))..))))))))))).. (-23.76 = -23.57 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:23 2006