Locus 31

Sequence ID 2L_DroMel_CAF1
Location 135,486 – 135,579
Length 93
Max. P 0.921908
window46

overview

Window 6

Location 135,486 – 135,579
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 82.25
Mean single sequence MFE -28.51
Consensus MFE -22.97
Energy contribution -21.11
Covariance contribution -1.86
Combinations/Pair 1.29
Mean z-score -2.54
Structure conservation index 0.81
SVM decision value 1.14
SVM RNA-class probability 0.921908
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 135486 93 - 22407834
AAUUAAUAAUCUGGUUUUUGGGCGACGGUGCGGAACUAUUGAGUUCUGUGGCCAUAACAGGCUAGUGCCUUGAUU-CGAUUGUUUAUGUGAUUU
....(((((((..(((...((((.((...((((((((....))))))))((((......)))).)))))).))).-.))))))).......... ( -28.10)
>DroPse_CAF1 24057 93 - 1
CAUUAACGAUCUUGC-UAUGGAUUUCGGUGCGGAACUCUCAAGUUCUGCGUUCAUAACAAGCCUUAGUCUUGAUUAUGAUUGUUUAUGGGAAUC
(((.(((((((....-...(((((..(((((((((((....))))))))((.....))..)))..))))).......))))))).)))...... ( -26.54)
>DroSec_CAF1 18051 93 - 1
AAUUAAUAAUCUGGUUUAUGGGCGACGGUGCGGAACUGUUGAGUUCUGUGGCCAUAACAGGCUAGUGCCUUGAUU-CGAUUGUUUAUGCGAUUU
....(((((((..(((...((((.((...((((((((....))))))))((((......)))).)))))).))).-.))))))).......... ( -28.20)
>DroSim_CAF1 19661 93 - 1
AAUUAAUAAUCUGGUUUAUGGGCGACGGUGCGGAACUGUUGAGUUCUGUGGCCAUAACAGGCUAGUGCCUUGAUU-CGAUUGUUUAUGUGAUUU
....(((((((..(((...((((.((...((((((((....))))))))((((......)))).)))))).))).-.))))))).......... ( -28.20)
>DroEre_CAF1 23427 93 - 1
AAUUAAUAAUCUGGUUUAUGGGCGGCGGUGCGGAACUCUUGUGUUCUGCGGCCAUAACAGGCUGAUGCCUUGAUU-CGAUUGUUAAUGCGAUUU
.((((((((((..(((...(((((.(...(((((((......)))))))((((......))))).))))).))).-.))))))))))....... ( -33.50)
>DroPer_CAF1 26428 93 - 1
CAUUAACGAUCUUGC-UAUGGAUUUCGGUGCGGAACUCUCAAGUUCUGCGUUCAUAACAAGCCUUAGUCUUGAUUAUGAUUGUUUAUGGGAGUC
(((.(((((((....-...(((((..(((((((((((....))))))))((.....))..)))..))))).......))))))).)))...... ( -26.54)
>consensus
AAUUAAUAAUCUGGUUUAUGGGCGACGGUGCGGAACUCUUGAGUUCUGCGGCCAUAACAGGCUAGUGCCUUGAUU_CGAUUGUUUAUGCGAUUU
....(((((((........(((((..(((((((((((....))))))))(.......)..)))..))))).......))))))).......... (-22.97 = -21.11 +  -1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:43 2006