Locus 3099

Sequence ID 2L_DroMel_CAF1
Location 8,817,191 – 8,817,299
Length 108
Max. P 0.500000
window4932

overview

Window 2

Location 8,817,191 – 8,817,299
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 90.68
Mean single sequence MFE -20.21
Consensus MFE -18.29
Energy contribution -17.97
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.91
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8817191 108 - 22407834
CAAAGAUUAGUUGGACCAGAAGGGAUUAUAUAAAGUGAUGAUCUAAUCACAAGAAAACCCAUGUGGCAUAUGCUGUUCUAAUCAGCACGUAAAUGGUUAGCUAAAAGA
......(((((((.((((...(((..........(((((......))))).......))).......(..(((((.......)))))..)...))))))))))).... ( -23.53)
>DroSec_CAF1 25383 106 - 1
CAACUAUUAGUUGAACCAGAAGAGUUU--AUAAAAUAAUGAUCUAAUCACAAGAAAACACAUGUGGCACAUGCUGUUCUAAUCAGCACAUAAAUGGUUGACUAAAAGA
...((.((((((.(((((.........--.................(((((.(......).)))))....(((((.......)))))......))))))))))).)). ( -19.90)
>DroSim_CAF1 25183 106 - 1
CAACGAUUAGUUGAACCAGAAGAGUUU--AUAAAAUAAUGAUCUAAUCACAAGAAAACACAUGUGGCACAUGCUGUUCUAAUCAGCACAUAAAUGGUUGACUACAAGA
.......(((((.(((((.........--.................(((((.(......).)))))....(((((.......)))))......))))))))))..... ( -17.20)
>consensus
CAACGAUUAGUUGAACCAGAAGAGUUU__AUAAAAUAAUGAUCUAAUCACAAGAAAACACAUGUGGCACAUGCUGUUCUAAUCAGCACAUAAAUGGUUGACUAAAAGA
......((((((.(((((............................(((((.(......).)))))....(((((.......)))))......))))))))))).... (-18.29 = -17.97 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:20 2006