Locus 3098

Sequence ID 2L_DroMel_CAF1
Location 8,814,679 – 8,814,780
Length 101
Max. P 0.942106
window4931

overview

Window 1

Location 8,814,679 – 8,814,780
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 91.52
Mean single sequence MFE -29.12
Consensus MFE -24.90
Energy contribution -24.65
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -2.31
Structure conservation index 0.86
SVM decision value 1.32
SVM RNA-class probability 0.942106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8814679 101 + 22407834
A----CCAAUCCCAGUCGAACGAAAUUGGCUCCACGC--CACUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA
.----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -30.60)
>DroSec_CAF1 22876 101 + 1
A----CCAAUCCCAGUCGAACGAAAUUGGCUCCACGC--CAUUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA
.----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -28.20)
>DroSim_CAF1 22691 101 + 1
A----CCAAUCCCAGUCGAACGAAAUUGGCUCCACGC--CAUUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA
.----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -28.20)
>DroEre_CAF1 27535 101 + 1
A----CCAAUCCCCGUCGCACCAAAUUGGCUCCACGC--CGCUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCGGAAAAUUGGA
.----(((((.................(((.....))--).(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -29.00)
>DroYak_CAF1 25258 101 + 1
A----CCAAUCCCAGUCGAACCAAAUUGGCUCCACGC--CACUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA
.----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -30.60)
>DroAna_CAF1 25054 107 + 1
GCCAGCCAAUCCCACUUGAAACAAAUUAGCUCCAGAGCUCUCUGUUGGUUUUGGCCCCUCCCGGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA
.....(((((....(((((........(((.((((.((((...(((((((((((......)))).))))))).))))..)))))))....)))))......))))). ( -28.10)
>consensus
A____CCAAUCCCAGUCGAACCAAAUUGGCUCCACGC__CACUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA
.....(((((....(((((......)))))...........(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). (-24.90 = -24.65 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:19 2006