Locus 3097

Sequence ID 2L_DroMel_CAF1
Location 8,812,326 – 8,812,436
Length 110
Max. P 0.918255
window4930

overview

Window 0

Location 8,812,326 – 8,812,436
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.13
Mean single sequence MFE -27.42
Consensus MFE -16.32
Energy contribution -16.35
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.60
SVM decision value 1.12
SVM RNA-class probability 0.918255
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8812326 110 + 22407834
---UUUUUUUUGUUGUAUCUGGGCAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAACAUCAGU--GUU-CC----UGAUGCU
---..................((((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..((((((.--...-.)----))))).. ( -28.20)
>DroPse_CAF1 35840 104 + 1
---------------CAUCC-AGCAGUAAAUUAAGCGUAAAAUCAUAAAACCAGUCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGGACAUCAGUCCGUUUCCCCCUGGAUGCC
---------------(((((-((..(((((((((((((((((((((...(((......)))))))..)))))))).....)))))))))((((((....))))))......))))))).. ( -32.60)
>DroEre_CAF1 25244 113 + 1
CAAUUUUUUUUCUUGUAUCUGGGCAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAACAUCAGA--GUU-CC----UGAUGCU
.....................((((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..((((((.--...-.)----))))).. ( -28.70)
>DroWil_CAF1 57995 94 + 1
------------------AGGGGCAGUAAAUUAAGCGUGAAAUCAUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGAAAAGCAGA---UA-CC----AGAUGCU
------------------...(((((((((((((((((((((((((...(((......)))))))..)))))))).....)))))))))((.....))...---..-..----...)))) ( -19.80)
>DroAna_CAF1 22843 102 + 1
---------CCUUUGUAUCUGGGCAGUAAAUUAAGCGUAAACUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCUUUGAUUUAUGCGAACAUCAGA----U-CC----UGAUGCU
---------.....(((((.(((((.((((((((((........((........))..(((((((....))))))).)).)))))))))))(.....)...----.-))----.))))). ( -22.60)
>DroPer_CAF1 36042 104 + 1
---------------CAUCC-AGCAGUAAAUUAAGCGUAAAAUCAUAAAACCAGUCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGGACAUCAGUCCGUUUCCCCCUGGAUGCC
---------------(((((-((..(((((((((((((((((((((...(((......)))))))..)))))))).....)))))))))((((((....))))))......))))))).. ( -32.60)
>consensus
_______________UAUCUGGGCAGUAAAUUAAGCGUAAAAUCAUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGAACAUCAGA__GUU_CC____UGAUGCU
......................(((.(((((((((((((((((......(((......))).....))))))))).....)))))))))))............................. (-16.32 = -16.35 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:18 2006