Locus 3096

Sequence ID 2L_DroMel_CAF1
Location 8,810,800 – 8,810,892
Length 92
Max. P 0.568689
window4929

overview

Window 9

Location 8,810,800 – 8,810,892
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.02
Mean single sequence MFE -22.82
Consensus MFE -13.69
Energy contribution -15.08
Covariance contribution 1.39
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.568689
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8810800 92 - 22407834
CAGAAAUCAUUCGCCA-GCGGCAAGAGCAACAGAAAGUGCAGAAAUGCAGUGCCAAUUGCGCAAUAGUUGAAGGCAUGAGGGCGACUCAAAGG
..........(((((.-.((((.....((((......((((....))))((((.....))))....))))...)).))..)))))........ ( -26.90)
>DroSec_CAF1 19067 92 - 1
CAGAAAUCAUUCGCCA-GCAACAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAUUGCGCAAUAGUUGAAGGCAAGAGGGCGAUUCAAAGG
..........(((((.-(((.....((((........))))....)))..((((....((......))....))))....)))))........ ( -21.70)
>DroSim_CAF1 18832 92 - 1
CAGAAAUCAUUCGCCA-GCGGCAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAUUGCGCAAUAGUUGAAGGCAAGAGGGCGAUUCAAAGG
..........(((((.-...((.....((((((....(((......)))((((.....))))..))))))...)).....)))))........ ( -24.70)
>DroEre_CAF1 23702 92 - 1
CGGAAAUCAUUCGCCA-GCGGCAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAAGGCGCAAUAGUUGAAGGCAGUAGGGCAAUUCAAAGG
............(((.-((.((.....((((((....(((......)))(((((...)))))..))))))...)).))..))).......... ( -24.40)
>DroYak_CAF1 21070 92 - 1
CAGAAAUCAUUCGCCA-GCGGCAAAAGCAACUGAAAGUGCUGAGAUGCAGUGCCAAAUGCGCAAUAGUUGAAGGCAGGAGGGCAAUUGAAAAG
......(((...(((.-.(.((.....((((((....(((......)))((((.....))))..))))))...))..)..)))...))).... ( -23.30)
>DroAna_CAF1 21568 74 - 1
UAAAAAUCAUCAGCCAUGAGGCAAAAGUAAUUGAAAGCACUGAAGUGCAAUGCCAAAUGCGCAAUAUUUAAAUG-------------------
............(((((..((((.((....))....((((....))))..))))..))).))............------------------- ( -15.90)
>consensus
CAGAAAUCAUUCGCCA_GCGGCAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAAUGCGCAAUAGUUGAAGGCAAGAGGGCGAUUCAAAGG
............(((.....((.....((((((....(((......)))((((.....))))..))))))...)).....))).......... (-13.69 = -15.08 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:17 2006