Locus 3095

Sequence ID 2L_DroMel_CAF1
Location 8,805,882 – 8,805,980
Length 98
Max. P 0.616639
window4928

overview

Window 8

Location 8,805,882 – 8,805,980
Length 98
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.07
Mean single sequence MFE -32.05
Consensus MFE -24.14
Energy contribution -24.61
Covariance contribution 0.48
Combinations/Pair 1.28
Mean z-score -1.45
Structure conservation index 0.75
SVM decision value 0.17
SVM RNA-class probability 0.616639
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8805882 98 - 22407834
GUCCUCCACCAGGAUGUACAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCCGAAGGA----AA-GGGGGGGGGGCAGAUAUC
(((((((.(((((..(((((((..--------..)))))))...)))...............(.((((((...)))))).).....----..-))..)))))))....... ( -35.90)
>DroSec_CAF1 14005 93 - 1
GUCCUCCACCAGGAUGUACAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCACAAGGA----AA-GG-----GGGCAGAUAUC
((((.((..((((..(((((((..--------..)))))))...))))................((((((...)))))).......----..-))-----))))....... ( -32.10)
>DroSim_CAF1 13783 93 - 1
GUCCUCCACCAGGAUGUACAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCACAAGGA----AA-GG-----GGGCAGAUAUC
((((.((..((((..(((((((..--------..)))))))...))))................((((((...)))))).......----..-))-----))))....... ( -32.10)
>DroEre_CAF1 18692 94 - 1
GUCCUCCACCAGGAUGUAUAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACUGCCGCCCCAGGUGGCACGAGCA----AAAAG-----GGGCAGAUAUC
(((((....((((..(((((((..--------..)))))))...))))......((((.((..(((((((...))))))).)))))----)...)-----))))....... ( -32.40)
>DroYak_CAF1 15929 102 - 1
GUCCUCCACCAGGAUGUACAUGCGAGUGUGCGAGUGUGUGCUAACCUGUCAAUAUUGCAUCACUGCCACCCCAGGGGGCACAAGGA----AAAGG-----GGGCAGAUAUC
((((.((..((((..((((((((..(....)..))))))))...))))...........((..((((.((....))))))....))----...))-----))))....... ( -33.90)
>DroAna_CAF1 16774 88 - 1
-ACCCCCACCAGAAUGUGGA---G--------AAUGUGUGUUUGCCUGUCAAUAUUGCAUCAGAGCCGCUCCAGGCGGCAAAUGGGAGUGAA-GU-----GGGCAG-----
-....((((......)))).---.--------..........(((((.(((...((.(((....(((((.....)))))..))).)).))).-..-----))))).----- ( -25.90)
>consensus
GUCCUCCACCAGGAUGUACAUACG________AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCACAAGGA____AA_GG_____GGGCAGAUAUC
(((((((..((((..((((((((..........))))))))...))))................((((((...))))))....)))..............))))....... (-24.14 = -24.61 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:16 2006