Locus 3091

Sequence ID 2L_DroMel_CAF1
Location 8,799,355 – 8,799,450
Length 95
Max. P 0.941721
window4922

overview

Window 2

Location 8,799,355 – 8,799,450
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 90.73
Mean single sequence MFE -32.76
Consensus MFE -25.96
Energy contribution -27.00
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.79
SVM decision value 1.32
SVM RNA-class probability 0.941721
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8799355 95 - 22407834
GAGCCAAGACAGCUCUUCCGUCCGGAGUCGGGGAGCCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA
(.(((......(((((.(((.(....).))))))))........(((((((((.(((((.....))))).)).))))).))....))))...... ( -30.30)
>DroSec_CAF1 7238 95 - 1
GAGCCAAGACAGCUCUUCCGGCCGGAGUCGGGGAGCCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA
((((.......))))....(((((((((.((((((((((...((((((......))))))...)))..)))).))).))))...)))))...... ( -33.70)
>DroSim_CAF1 7255 95 - 1
GAGCCAAGACAGCUCUUCCGGCCGGAGUUGGGGAACCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA
((((.......))))....(((((...(((((...)))))....(((((((((.(((((.....))))).)).))))).))...)))))...... ( -34.70)
>DroEre_CAF1 8930 89 - 1
GAGCCAAGAAAGCUCUUCCGGCCGGAGUCGGG-GUACCAAAAAAGAUGAGAGACCGUCUUACAUGGAUG-----CCCACUCACACGGCCACACGA
((((.......))))....(((((((((..((-((((((...((((((......))))))...))).))-----)))))))...)))))...... ( -33.60)
>DroYak_CAF1 9121 94 - 1
GAGCCAAGAAAGCUCUUCCGGCCGGAGUCGGGAAUGCCGAAAAAGAUGAGAGACCGUCUUACAUGGACGCUG-GCUCACUCACACGGCCAUAUGA
((((.......))))....(((((...((((.....))))....((((((..(.(((((.....))))).).-.)))).))...)))))...... ( -31.50)
>consensus
GAGCCAAGACAGCUCUUCCGGCCGGAGUCGGGGAGCCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA
((((.......))))....(((((((((.((.....))...........((((((((((.....)))))...)))))))))...)))))...... (-25.96 = -27.00 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:11 2006