Locus 3089

Sequence ID 2L_DroMel_CAF1
Location 8,796,242 – 8,796,341
Length 99
Max. P 0.807472
window4920

overview

Window 0

Location 8,796,242 – 8,796,341
Length 99
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 70.99
Mean single sequence MFE -32.90
Consensus MFE -15.69
Energy contribution -16.50
Covariance contribution 0.81
Combinations/Pair 1.11
Mean z-score -1.78
Structure conservation index 0.48
SVM decision value 0.64
SVM RNA-class probability 0.807472
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8796242 99 + 22407834
CCUCGUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCAUCAUCA
((....)).......((((((((((((((........---------------..))-)))))((((((.(((....)))))))))..((----(((........))))).))))))).. ( -26.70)
>DroPse_CAF1 16935 119 + 1
UUUCCAUUGCAUUUGGAACAAUGAUGAGCUGCGGCUGUUGGUCCUUCUUACUCCUUGAAAGUGAGUGCUACACCCGUGUGCACUCGAGUGCCAGCCAGCCAAAGGGUUCAUCAUCAGCA
.(((((.......)))))..((((((((((..(((((((((..((((((.(.....).))).((((((.(((....))))))))))))..)))).)))))....))))))))))..... ( -44.30)
>DroSec_CAF1 4164 99 + 1
CCUCAUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCAUCAUCA
((....)).......((((((((((((((........---------------..))-)))))((((((.(((....)))))))))..((----(((........))))).))))))).. ( -26.70)
>DroEre_CAF1 5690 99 + 1
CCUCGUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCAUCAUCA
((....)).......((((((((((((((........---------------..))-)))))((((((.(((....)))))))))..((----(((........))))).))))))).. ( -26.70)
>DroYak_CAF1 5545 99 + 1
CCUCGUGAAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCACCAUCA
....((......))..(((((((((((((........---------------..))-)))))((((((.(((....)))))))))((((----(((........))))).)).)))))) ( -28.70)
>DroPer_CAF1 17204 119 + 1
UUUCCAUUGCAUUUGGAACAAUGAUGAGCUGCGGCUGUUGGUCCUUCUUACUCCUUGAAAGUGAGUGCUACACCCGUGUGCACUCGAGUGCCAGCCAGCCAAAGGGUUCAUCAUCAGCA
.(((((.......)))))..((((((((((..(((((((((..((((((.(.....).))).((((((.(((....))))))))))))..)))).)))))....))))))))))..... ( -44.30)
>consensus
CCUCGUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU_______________CCUU_AUUAUGAGUGCUACACCCGUGUGCACUCGAGA____GCCAGGCAAAGGGUUCAUCAUCAUCA
.................(((((........................................((((((.(((....)))))))))((......(((........)))...)).))))). (-15.69 = -16.50 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:09 2006