Locus 3087

Sequence ID 2L_DroMel_CAF1
Location 8,791,563 – 8,791,683
Length 120
Max. P 0.981254
window4917

overview

Window 7

Location 8,791,563 – 8,791,683
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -35.17
Consensus MFE -35.57
Energy contribution -35.80
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -2.43
Structure conservation index 1.01
SVM decision value 1.88
SVM RNA-class probability 0.981254
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8791563 120 - 22407834
GUGGGCACUUUAUGAAUAUUGGGCGUUCUUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAACCAGAUUUUGGUGGAGGGCCCCUUCAAUGUUUUAUGAAA
........((((((((((((((((.((((.(..(...((((.(((((((..(((...(((.....)))...)))))))))).))))..)..).)))).))))....)))).)))))))). ( -33.30)
>DroSec_CAF1 94253 120 - 1
GUGGGCACUUUAUGAAUAUUGGGCGUUCCUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAAACAGAUUUUGGUGGAGGGCCCCUUCAAUGUUUUAUGAAC
........((((((((((((((((.((((.(..(...((((((((((((..(((...(((.....)))...)))))))))))))))..)..).)))).))))....)))).)))))))). ( -39.00)
>DroSim_CAF1 97831 120 - 1
GUGGGCACUUUAUGAAUAUUUGGCGUUCCUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAAACAGAUUUUGGUGGAGGGCUCCUUCAAUGUUUUAUGAAC
........((((((((((((.(((.((((.(..(...((((((((((((..(((...(((.....)))...)))))))))))))))..)..).)))).))).....)))).)))))))). ( -33.20)
>consensus
GUGGGCACUUUAUGAAUAUUGGGCGUUCCUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAAACAGAUUUUGGUGGAGGGCCCCUUCAAUGUUUUAUGAAC
........((((((((((((((((.((((.(..(...((((((((((((..(((...(((.....)))...)))))))))))))))..)..).)))).))))....)))).)))))))). (-35.57 = -35.80 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:06 2006