Locus 3086

Sequence ID 2L_DroMel_CAF1
Location 8,791,174 – 8,791,294
Length 120
Max. P 0.939553
window4916

overview

Window 6

Location 8,791,174 – 8,791,294
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -25.13
Consensus MFE -24.50
Energy contribution -24.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.97
SVM decision value 1.30
SVM RNA-class probability 0.939553
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8791174 120 - 22407834
GAAUAUGAGAACUACCACCUCCAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA
.....(((((.(((..(((((...)))))..)))))))).((((((((....)))...........((.(((....))).))..........................)))))....... ( -26.40)
>DroSec_CAF1 93857 120 - 1
AAAUAUGAGAACUCCCACCUCCAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA
.....(((((.((...(((((...)))))...))))))).((((((((....)))...........((.(((....))).))..........................)))))....... ( -24.50)
>DroSim_CAF1 97441 120 - 1
GAAUAUGAGAACUCCCACCUCUAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA
.....(((((.((...(((((...)))))...))))))).((((((((....)))...........((.(((....))).))..........................)))))....... ( -24.50)
>consensus
GAAUAUGAGAACUCCCACCUCCAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA
.....(((((.((...(((((...)))))...))))))).((((((((....)))...........((.(((....))).))..........................)))))....... (-24.50 = -24.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:05 2006