| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,788,349 – 8,788,442 |
| Length | 93 |
| Max. P | 0.588707 |
| Location | 8,788,349 – 8,788,442 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.94 |
| Mean single sequence MFE | -39.68 |
| Consensus MFE | -28.45 |
| Energy contribution | -29.03 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8788349 93 - 22407834 ----------------A---UCCUGAAGGCUCAAGCUUCGGCAGCGGCGUGUGCCGGCAGGAAACGCGCCAGAACGCAGAGGGGGAG--AACCCAGA------GGGUUGCCCCGUGAACU ----------------.---(((((..(((.((.(((.(....).))).)).)))..)))))..(((((......))....((((..--(((((...------))))).))))))).... ( -37.80) >DroSec_CAF1 91092 96 - 1 -------------UGAA---UCCUGAAGGCUCAAGCUUCGGCAUCGGCGUGUGCCGGCAGGAAACACGCCAGAACGCAGAGGGGUAG--AACCCAGA------GGGUUGCCCCGUGAACU -------------....---(((((..(((.((.(((........))).)).)))..)))))..(((((......))...((((((.--.((((...------))))))))))))).... ( -37.80) >DroSim_CAF1 94645 103 - 1 ------UGAAUCCUGAA---UCCUGAAGGCUCAAGCUUCGGCAGCGGCGUGUGCCGGCAGGAAACGCGCCAGAACGUAGAGGGGUAG--AACCCAGA------GGGUUGCCCCGUGAACU ------(((..(((...---......))).))).((....)).(((((((((.((....))..)))))))..........((((((.--.((((...------))))))))))))..... ( -36.30) >DroEre_CAF1 97558 111 - 1 GCGUCCUGAGUCCUGAAUCCUGCUGAAGGCUCAAGCUUCGGCAGCGGCGUGUGCCGGCAGGAAACGCGCCAGAACGCAGAGG-GGAG--AACCCAUA------GGGUUGCCCCGUGAACU ((((.((............(((((((((.(....)))))))))).(((((((.((....))..))))))))).))))...((-((..--(((((...------))))).))))....... ( -48.30) >DroYak_CAF1 96365 95 - 1 GAA-----------------UCCUGAAGGCUCAAGCUUCGGCAGCGGCGUGUGCCGGCAGGAAACGCGCCAGAACGCAGAGGGGGAG--AACCCAGA------GGGUUGUCCCGUGAACU ...-----------------(((((..(((.((.(((.(....).))).)).)))..)))))..(((((......)).....((((.--(((((...------))))).))))))).... ( -38.90) >DroAna_CAF1 113424 94 - 1 --------------------------AGGCUCAAGCUUCAGGAGCGGCGUGCGCCGGCAGGAAACGCGCCAGAUCCCAGAGGGGGAGCCAAGCCAGGGCUCUGGGGUUGUCCCAUGAACU --------------------------.(((....)))(((((..(((((((..((....))...)))))).(((((((((.((....))..((....))))))))))))..)).)))... ( -39.00) >consensus ________________A___UCCUGAAGGCUCAAGCUUCGGCAGCGGCGUGUGCCGGCAGGAAACGCGCCAGAACGCAGAGGGGGAG__AACCCAGA______GGGUUGCCCCGUGAACU .............................(((..((....))...((((((..((....))...))))))........)))((((....(((((.........))))).))))....... (-28.45 = -29.03 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:56 2006