Locus 3080

Sequence ID 2L_DroMel_CAF1
Location 8,785,945 – 8,786,041
Length 96
Max. P 0.969641
window4903

overview

Window 3

Location 8,785,945 – 8,786,041
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.07
Mean single sequence MFE -39.05
Consensus MFE -33.16
Energy contribution -33.40
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.03
Structure conservation index 0.85
SVM decision value 1.65
SVM RNA-class probability 0.969641
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8785945 96 - 22407834
CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCAA-CCAGGAUCCGGGAUGCA-----
....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((------------------.....-...))))))))).))).----- ( -39.09)
>DroSec_CAF1 88656 96 - 1
CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCAG-CCAGGAUCCGGGAUGCA-----
....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((------------------.....-...))))))))).))).----- ( -39.09)
>DroSim_CAF1 92180 96 - 1
CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCAG-CCAGGAUCCGGGAUGCA-----
....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((------------------.....-...))))))))).))).----- ( -39.09)
>DroEre_CAF1 95194 96 - 1
CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUCCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCGA-CCAGGAUCCGGAAUGCA-----
....(((...((((((.((((((................)).))))..)))))).)))(((.....((((((((------------------.....-...))))))))..))).----- ( -35.39)
>DroYak_CAF1 93838 120 - 1
CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCCCAGGCAAUCCGGCAAUCCGGCAAUCCGGGGUCCAGGAUGCAGCACG
....(((...((((((.((((((................)).))))..)))))).)))(((....((.(((((((.((....((((....))))....))))))))).)).)))...... ( -42.59)
>consensus
CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC__________________GGCAA_CCAGGAUCCGGGAUGCA_____
....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((...........................))))))))).)))...... (-33.16 = -33.40 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:53 2006