| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 886,516 – 886,625 |
| Length | 109 |
| Max. P | 0.655804 |
| Location | 886,516 – 886,625 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.23 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -14.94 |
| Energy contribution | -15.13 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 886516 109 - 22407834 ----UCGAUUUUCCAUUUUC-AG-----CACACACUCGACUUUGGUUUGGCA-ACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGAGCACAUAAGCCGGACAAAUAAAACCC ----((((............-..-----.......)))).....((((((((-(((.....)))).......(((..((((((....)))))).))).....)))))))........... ( -19.10) >DroVir_CAF1 20364 88 - 1 -------------------------------ACACUCGACUUUGGUUUGGCA-ACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGACCACAUAAGCCGGACAAAUAAAAACC -------------------------------.............((((((((-(((.....))))............((((((....)))))).........)))))))........... ( -16.90) >DroGri_CAF1 16179 89 - 1 -------------------------------ACACUCGACUUUGGUUUGGCCAACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGACCACAUAAGCCGGACAAAUAAAAACC -------------------------------.............(((((((.((((.....))))............((((((....)))))).........)))))))........... ( -16.00) >DroMoj_CAF1 17136 102 - 1 ----UACA---------ACCAUA-----CCAACACUCGACUUUGGCCUGGCAAACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGACCACAUAAGCCGGACAAAUAAAAACC ----....---------......-----............((((((.(((((((((.....))).......))))))((((((....)))))).........))))))............ ( -17.11) >DroAna_CAF1 15554 114 - 1 ----CCGGCCCCUCCUUUUC-AAAACCAGACACACUCGACUUUGGUUUGGCA-ACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGAGCACAUAAGCCGGACAAAUAAAAACC ----(((((..((((((...-...............(((((.(((..(((((-(((.....)))........)))))..))).))))).)))))).......)))))............. ( -26.41) >DroPer_CAF1 14785 114 - 1 CCCGACCCAAUCCCACUGCCGGG-----CACACACUCGACUUUGGUUUGGCA-ACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGAGCACAUAAGCCGGACAAAUAAAAACC ..(((......(((......)))-----.......)))......((((((((-(((.....)))).......(((..((((((....)))))).))).....)))))))........... ( -23.82) >consensus _____C_____________C________CACACACUCGACUUUGGUUUGGCA_ACAUAAAUUGUUAAAGAAUUGCCACUUUACAGUCGUAAGGACCACAUAAGCCGGACAAAUAAAAACC ........................................((((((((((((.(((.....)))........)))).((((((....)))))).......))))))))............ (-14.94 = -15.13 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:37 2006