| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,782,741 – 8,782,855 |
| Length | 114 |
| Max. P | 0.724521 |
| Location | 8,782,741 – 8,782,855 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.91 |
| Mean single sequence MFE | -19.67 |
| Consensus MFE | -17.65 |
| Energy contribution | -16.82 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8782741 114 + 22407834 UCGCAGUCAACACUAUUGCGAAUGACGAUGAUUGCAUAAAAUCGCUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCAAAAGUAUAACAAACACAUGGAAGUCGACGUCC------ (((((((.......)))))))..((((.(((((.(((......((......)).................((((.....))))...............)))..))))).)))).------ ( -21.90) >DroSec_CAF1 85533 114 + 1 UCGCAGCCAACACUAUUGCGAAUGACGAUGAUUGCAUAAAAUCGUUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCAAAAGUAUAACAAACACAUGGAAGUCGACGUCC------ ((((((.........))))))..((((.(((((.(((......((((.((((.......)))).))))..((((.....))))...............)))..))))).)))).------ ( -18.80) >DroSim_CAF1 89040 114 + 1 UCGCAGCCAACACUAUUGCGAAUGACGAUGAUUGCAUAAAAUCGCUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCAAAAGUAUAACAAACACAUGGAAGUCGACGUCC------ ((((((.........))))))..((((.(((((.(((......((......)).................((((.....))))...............)))..))))).)))).------ ( -20.10) >DroEre_CAF1 90615 114 + 1 UUGCAGCCAACACUAUUGCGAACGACGAUGAUUGCAUAAAAUCGCUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCAAAAGUAUAACAAACACAUGGAAGUCGACGUCC------ ((((((.........)))))).(((((((((((((((............))))))...))))).......((((.....)))).....................))))......------ ( -18.50) >DroYak_CAF1 90506 114 + 1 UUGCAGCCAACACUAUUGCGAAUGGUGAUGAUUGCAUAAAAUCGCUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCAGAAGUAUAACAAACACAUGGAAGUCGACGUCC------ .((((..((.((((((.....)))))).))..)))).....((((((..(((..................((((.....))))..((.......)).)))..))).))).....------ ( -19.80) >DroAna_CAF1 96704 120 + 1 UUGCCAGCAACACUAUUGCGAAUGAUGAUGAUUGCAUAAAAUCGCUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCGAAAGUAUAACAAACUCAUGAAAGUCUACGUCCCGAAAG ((((..((((.....))))...((((((...((((((............))))))...))))))........)))).((((....))))............................... ( -18.90) >consensus UCGCAGCCAACACUAUUGCGAAUGACGAUGAUUGCAUAAAAUCGCUUAAAUGCAAAACUCAUUAAAAUAAUUGCAAAAUGCAAAAGUAUAACAAACACAUGGAAGUCGACGUCC______ ((((((.........))))))..((((.(((((.(((......((......)).................((((.....))))...............)))..))))).))))....... (-17.65 = -16.82 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:46 2006