Locus 3075

Sequence ID 2L_DroMel_CAF1
Location 8,768,162 – 8,768,282
Length 120
Max. P 0.688633
window4891

overview

Window 1

Location 8,768,162 – 8,768,282
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.22
Mean single sequence MFE -36.18
Consensus MFE -29.74
Energy contribution -29.60
Covariance contribution -0.14
Combinations/Pair 1.24
Mean z-score -2.06
Structure conservation index 0.82
SVM decision value 0.32
SVM RNA-class probability 0.688633
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8768162 120 + 22407834
AAGCCAACGGCAAACUGGUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCACGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUUUUGACCAGUUUC
..(((...)))(((((((((((..(((.(((((.(((((((((((((......)))...((.....)))))....))))))))))))((.....))........))).))))))))))). ( -37.80)
>DroSec_CAF1 72408 120 + 1
AAGCCAACGGCGAAUUGAUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCAAGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUCCUGACCAGUUUC
..(((...)))((((((.(((...(((.(((((.((((((((((.((((....((....))...)))))))....))))))))))))((.....))........)))..))).)))))). ( -29.40)
>DroSim_CAF1 75038 120 + 1
AAGCCAACGGCAAACUGGUCAAUGACACUCUGGUAGUUCACGGCAGCUUCGUCGUUCAUGCUCCAAGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUCCUGACCAGUUUC
..(((...)))((((((((((..((((.(((((.((((((((((.((((.(..((....))..))))))))....))))))))))))((.....))........)))).)))))))))). ( -42.50)
>DroEre_CAF1 76475 120 + 1
AAGCCAACGGCGAACUGGUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCAGGCGCCACCCGUGAAUUCCAGACGACCCUCGUUCACCAAAGUCCUGACCAGCUGC
..(((...)))...(((((((...((..(((((.(((((((((..((((....((....))...)))).....))))))))))))))((.....)).........))..))))))).... ( -35.50)
>DroYak_CAF1 75736 120 + 1
AAGCCAACGGCAAACUGGUCGAUCACACUCUGGUAGUUCACGGCAGCCUCAUCGUUCAUGCUCCAGGCGCCACCGGUGAAUUCCAGACGACCCUCGUUCACCAGAGUCCUGACCAGCUGC
..(((...)))...(((((((.....((((((((((((((((((.((((....((....))...)))))))....)))))))...((((.....)))).))))))))..))))))).... ( -41.00)
>DroAna_CAF1 73650 120 + 1
AAGCCUACGGUGAACUGGUCAAUCACACUCUGGUAGUUCACGGCAGCCUCAUCGUUCAUGCUCCAGCCGCCGCCGGUAAACUCCAUGCGGCCUUCGUUGACAAGUUUCUUGACUAUAUGC
..((.((..(((((((.((((((......((((.(((..((((........))))....)))))))..(((((.((......))..)))))....)))))).)))))....))..)).)) ( -30.90)
>consensus
AAGCCAACGGCAAACUGGUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCAGGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUCCUGACCAGUUGC
..(((...)))...(((((((.......(((((.((((((((((.((((....((....))...)))))))....))))))))))))((.....)).............))))))).... (-29.74 = -29.60 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:42 2006