| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,763,790 – 8,763,891 |
| Length | 101 |
| Max. P | 0.851907 |
| Location | 8,763,790 – 8,763,891 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 71.59 |
| Mean single sequence MFE | -22.68 |
| Consensus MFE | -5.30 |
| Energy contribution | -5.10 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.23 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8763790 101 + 22407834 UCACGCCGCAUGAGUGAGCAGUUAUCG-----------C---GUCAAUGACAUUA--ACUCAACACCAG-AAAUCUGAAAAUAUACAACCCAAAACAGCAGGAAAACCCGGUAAUACU ....(((((.(((((..((.......)-----------)---(((...)))....--)))))....(((-....)))....................)).((.....)))))...... ( -16.70) >DroSec_CAF1 68054 104 + 1 GCACUCCACAUUAGUGAGCAGUUAUCG-----------CGAUGUCAGAGACAUUA--ACCCAACACCAG-AAAUCUGAAAACACAGAACCCAAAACAGCAGGAAAACCCUGUAAUACU ...(((.(((((.((((.......)))-----------))))))..)))......--............-...((((......))))..........(((((.....)))))...... ( -18.20) >DroSim_CAF1 70669 115 + 1 UCACUCCACAUGAGUGAGCAGUUAUCGUGUUGUAACGGCGAUGUCAAAGACAUUA--ACCCAACACCAG-AAAUCUGAAAACACACAACCCAAAACAGCACGAAAACCCGGUAAUACU ((((((.....))))))((.(((.(((((((((...((.((((((...)))))).--..)).....(((-....))).................))))))))).)))...))...... ( -29.30) >DroEre_CAF1 72124 115 + 1 UCACUCCACUUGAGUGAGUAGUUAUCGCGUUAUAACGGGAAUGUCAAAGACAUUA--ACCCAACACCAG-AAGCCCGAAAACAAUAAACCCAAAACAGCAGGAAAACCCGGCAAUACU ((((((.....))))))((((((.(((.(((.....(((((((((...)))))).--.)))..(....)-.))).))).)))...............((.((.....)).))..))). ( -24.10) >DroAna_CAF1 69648 115 + 1 UGA---CAUACAAGUGAGCAGUUAUCUCGUUAUUAUGGUAAUUGCCGAGCAGUUAUUACGUAAAACAUGAAAAUCCCAAAAGGAAGAACUGCAAACAGCAGGAACACGAGUCUAUUGC ...---...........(((((...(((((.....((((((((((...)))))))))).((............(((.....)))....((((.....))))..)))))))...))))) ( -25.10) >consensus UCACUCCACAUGAGUGAGCAGUUAUCG_GUU_U_A_GGCAAUGUCAAAGACAUUA__ACCCAACACCAG_AAAUCUGAAAACAAACAACCCAAAACAGCAGGAAAACCCGGUAAUACU ......(((....))).((.(((................((((((...))))))............(((.....)))................))).))................... ( -5.30 = -5.10 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:40 2006