| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,762,124 – 8,762,220 |
| Length | 96 |
| Max. P | 0.528413 |
| Location | 8,762,124 – 8,762,220 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.95 |
| Mean single sequence MFE | -32.66 |
| Consensus MFE | -22.16 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.37 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8762124 96 - 22407834 UGGAAAAUUGCGCUC------------CUCUGUGAUUUUCCAUAGAGGAGAAAUAAAUCAACUGCAUGUCCUGUUUCUGGCGAUUGCCAGGAAUUCUGGUUCGUU----UCC- .(((((..(((((((------------(((((((......))))))))))............))))...((.(((((((((....)))))))))...))....))----)))- ( -33.50) >DroSec_CAF1 66371 96 - 1 UGGAAAAUUGCGCUC------------CUCUGUGAUUUUCCAUAGAGGAGAUAUAAAUCAACUGCAUGUCCUGUUUCUGGCGAUUGCCAGGAAUCCUGGUUCGUU----UCC- .(((((...((.(((------------(((((((......))))))))))......................(((((((((....)))))))))....))...))----)))- ( -33.10) >DroSim_CAF1 69006 96 - 1 UGGAAAAUUGCGCUC------------CUCUGUGAUUUUCCAUAGAGGAGAAAUAAAUCAACUGCAUGUCCUGUUUCUGGCGAUUGCCAGGAAUCCUGGUUCGUU----UCC- .(((((...((.(((------------(((((((......))))))))))......................(((((((((....)))))))))....))...))----)))- ( -33.10) >DroEre_CAF1 70250 96 - 1 UGGAAAAUUGCGCUU------------CUCUGUGAUUUUCCAUAGCGGAGAAAUAAAUCAACUGCAUGUCCUGUUUCUGGCGAUUGCCAGGAAUCCUCCUUCGUU----GCC- ((((((((..((...------------...))..))))))))((((((((..........((.....))...(((((((((....)))))))))....)))))))----)..- ( -30.10) >DroYak_CAF1 69272 100 - 1 UGGAAAAUUGCGCUC------------CUCUGUGAUUUUCCAUAGAGGAGAAAUAAAUCAACUGCAUGUCCUGUUCCUGGCGAUUGCCAGGAAUCCUCGUUCGUUCGUUCCC- .((((....((((((------------(((((((......))))))))))...............(((....(((((((((....)))))))))...))).)))...)))).- ( -36.60) >DroAna_CAF1 67993 109 - 1 UGUAAGGAUAUGCUGCUUUUCUCAACGCUCCGUGAUUUUCCAUAGAAGAGAAAUAAAUCAACUGCAUGUCCUGUUCCUGGCGAUUGCCAGGACUCCUCAUUCUUU----UCUC ....(((((((((....((((((.....((..((......))..)).))))))..........)))))))))..(((((((....))))))).............----.... ( -29.54) >consensus UGGAAAAUUGCGCUC____________CUCUGUGAUUUUCCAUAGAGGAGAAAUAAAUCAACUGCAUGUCCUGUUUCUGGCGAUUGCCAGGAAUCCUCGUUCGUU____UCC_ .(((....(((................(((((((......)))))))((........))....)))..))).(((((((((....)))))))))................... (-22.16 = -22.80 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:36 2006