Locus 307

Sequence ID 2L_DroMel_CAF1
Location 879,522 – 879,642
Length 120
Max. P 0.740659
window489

overview

Window 9

Location 879,522 – 879,642
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -45.43
Consensus MFE -31.22
Energy contribution -32.45
Covariance contribution 1.23
Combinations/Pair 1.30
Mean z-score -1.73
Structure conservation index 0.69
SVM decision value 0.45
SVM RNA-class probability 0.740659
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 879522 120 + 22407834
GAAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCUCCGAAGGAAUGGCGGAAGCUCUCGCUGAAACCGAGAAUGCCCUUCACACGUAUCUGAUUCGCUCCGAGUGGCUCCAGCUGCAUAA
....((((((((((((((((..((.(((((.((....(((((....((....))(((((.......)))))....)))))...))....))))).))..).))))))))))))))).... ( -49.40)
>DroPse_CAF1 7661 120 + 1
AAAAGUGGUUCGAGGCACUGGCGUUGAUCACCACCCCGAAAGUGUGGAAGAAGCUCUCGCUGAAGCCGAGGACACCUUUGACCCGAAUCUGGUCGCUGGCCAGAGGUUCCAAGUGAAUGU
.((((..((((..(((..(((((..((((.((((..(....).))))..))...)).)))))..)))..))))..))))((((....((((((.....))))))))))............ ( -35.40)
>DroSec_CAF1 7866 120 + 1
GGAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCUCCGAAGGAAUGGCGGAAGCUCUCGCUGAAGCCGAGGAUUCCCUUCACACGUAUCUGACUCGCUCCAAGUGGCUCCAGCUGCAUAA
....(((((((((((((((.....((((((.((....(((((...(((....)))(((((....).)))).....)))))...))....))).))).....))))))))))))))).... ( -46.50)
>DroEre_CAF1 11269 120 + 1
GAAAGUAGCUGGAGUCACUGUUGUUGAUCAUCGCCCCAAAGGAGUGGUGGAAGCUCUCGCUGAAGCCGAGGAUGCCCCUCACGCGUAUCUGAUCCGCUCCAAGUGGCUCCAGCCGCAGGA
....(..((((((((((((...((.(((((.(((((....)).(((((...(((....)))...)))((((.....)))))))))....))))).))....))))))))))))..).... ( -49.80)
>DroYak_CAF1 7664 120 + 1
AGAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCUCCGAAGGAGUGGUAGAAGCUCUCGCUGAAGCCGAGGAUGCCCCUCACACGUAUCUGAUCCGCUCCCAGUGGCUCCAGCUGCACAA
....((((((((((((((((..((.((((((((((((...))))))))(((.((....((....)).((((.....))))....)).))))))).))...)))))))))))))))).... ( -56.10)
>DroAna_CAF1 8357 120 + 1
AGAAGUAGUUGGAGUCGCUGUUGUUGAUCACCGCCCCGUACGAGUGCCGGAAGCUCUCGCUGAAGCCAAGGAUGCCCUUCACCCGGAUCUGAUCAGUUCCGAGGGGGUCCAAGUUCAUCA
.(((.(..((((..((((.((........)).))......((((.(.(....)).))))..))..))))((((.((((.....((((.((....)).)))))))).)))).).))).... ( -35.40)
>consensus
AAAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCCCCGAAGGAGUGGCGGAAGCUCUCGCUGAAGCCGAGGAUGCCCUUCACACGUAUCUGAUCCGCUCCAAGUGGCUCCAGCUGCAUAA
....((((((((((((((((..((.(((((...............(((...(((....)))...)))((((.....)))).........))))).))..).))))))))))))))).... (-31.22 = -32.45 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:36 2006