Locus 3069

Sequence ID 2L_DroMel_CAF1
Location 8,760,661 – 8,760,751
Length 90
Max. P 0.985969
window4881

overview

Window 1

Location 8,760,661 – 8,760,751
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 75.52
Mean single sequence MFE -25.53
Consensus MFE -19.30
Energy contribution -19.47
Covariance contribution 0.17
Combinations/Pair 1.22
Mean z-score -2.21
Structure conservation index 0.76
SVM decision value 2.03
SVM RNA-class probability 0.985969
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8760661 90 + 22407834
CCGCAGUCACGUCACCAA---UUCCCUCCC--CCUCUCCUCGCCAGCCCACCCCUUCCAAUCCUCCGGACGAUGGGAUGCGGCUGCGGCAGCAAU
((((((((.((((.(((.---.........--.........(....)......(.(((........))).).))))))).))))))))....... ( -24.00)
>DroPse_CAF1 85041 81 + 1
CCGCAGUCACAUCACAUACAUAUCUCUCUG--UCUCC---------C-UUCCUCUGUGUGUGCUUC--UCGAUGGGAUGCGACUGCGGCAGCAAU
((((((((.((((.((((((((........--.....---------.-......))))))))((..--.....)))))).))))))))....... ( -25.05)
>DroSec_CAF1 64937 89 + 1
CCGCAGUCACGUCACCAA---UUCCCUCCC--CCCCUCCUCCACACC-CCUCUCUUCCACUCCUCGGGACGAUGGGAUGCGGCUGCGGCAGCAAU
((((((((.((((.(((.---.((((....--...............-.................))))...))))))).))))))))....... ( -27.02)
>DroSim_CAF1 67593 78 + 1
CCGCAGUCACGUCACCAA---UUCCCUCCC-------------CACC-CCUCUCUUCCACUCCUCGGGACGAUGGGAUGCGGCUGCGGCAGCAAU
((((((((.((((.(((.---.((((....-------------....-.................))))...))))))).))))))))....... ( -27.41)
>DroEre_CAF1 68798 84 + 1
CCGCAGUCACGUCACCAA---UCCCC-CUACAUCCCU------CCCC-CCUCUCUGCCACUCCUCCGGACGAUGGGUUGCGGCUGCGGCAGCAAU
((((((((.(((......---.....-..))......------..((-(.((((((.........)))).)).)))..).))))))))....... ( -19.92)
>DroYak_CAF1 67780 90 + 1
CCGCAGUCACGUCACCAA---UUCCCUCUCCGCCCCC-CUUCGCCCC-UCCCUCUGCCAGUCCUGCGGACGAUGGGAUGCGGCUGCGGCAGCAAU
((((((((.((((.(((.---.....(((((((....-((..((...-.......)).))....))))).))))))))).))))))))....... ( -29.80)
>consensus
CCGCAGUCACGUCACCAA___UUCCCUCCC__CCCCU______CACC_CCCCUCUGCCACUCCUCCGGACGAUGGGAUGCGGCUGCGGCAGCAAU
((((((((.((((.(((....(((..........................................)))...))))))).))))))))....... (-19.30 = -19.47 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:32 2006