Locus 3064

Sequence ID 2L_DroMel_CAF1
Location 8,757,513 – 8,757,621
Length 108
Max. P 0.520839
window4874

overview

Window 4

Location 8,757,513 – 8,757,621
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.36
Mean single sequence MFE -18.94
Consensus MFE -14.98
Energy contribution -14.90
Covariance contribution -0.08
Combinations/Pair 1.13
Mean z-score -1.98
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.520839
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8757513 108 - 22407834
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA-AAUACUGAAACCGCAA-AAUAUGCGAGCUGCCAUUAAAG----AAGGGA---GCAACAAAAAA---AA
.(((.(((((((((((....))))))...(((((.......((..(((...-....)))..))((((.-....)))).))))).))))).)----))....---...........---.. ( -18.80)
>DroPse_CAF1 82036 117 - 1
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAAAAAAACUGAAACCGCAAAAAUAUGCCAACUGCCAUAAAAGCGGAAAGGAAAGAGCAAAAAAAAA---GC
..........((((((....))))))...(((((.......(((((((........)))...))))........)))..((((.......))))..........)).........---.. ( -17.46)
>DroSec_CAF1 61832 108 - 1
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA-AAUACUGAAACCGCAA-AAUAUGCGAGCUGCCAUUAAAG----AAGGGA---GCAACACAAAA---AA
..((.((((((.((((....)))))))))).))........(((.(((...-....)))....((((.-....)))).(((.((.......----..)).)---))..)))....---.. ( -18.90)
>DroYak_CAF1 64530 113 - 1
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA-AACACUGAAACCGCAA-AAUAUGCGAGCUGCCAUUAAAG----AAGGGAAG-GCAACAAAAACAGAAA
.(((......((((((....))))))...((..((.....(((((((((..-..)........((((.-....))))..))))))))....----....))..-))..........))). ( -20.22)
>DroAna_CAF1 62132 111 - 1
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAAAAAUACAGAAACCGCAAAAAUAUGCGAGCUGCCAUAAAAA----AUGGGG---GAA--AAAACCAGCCA
..((.((((((.((((....)))))))))).)).........((((.((..............((((......))))..((.((((.....----)))).)---)..--....)).)))) ( -20.80)
>DroPer_CAF1 78401 117 - 1
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAAAAAAACUGAAACCGCAAAAAUAUGCCAACUGCCAUAAAAGCGGAAAGGAAAGAGCAAAAAAAAA---GA
..........((((((....))))))...(((((.......(((((((........)))...))))........)))..((((.......))))..........)).........---.. ( -17.46)
>consensus
AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA_AAUACUGAAACCGCAA_AAUAUGCGAGCUGCCAUAAAAG____AAGGGA___GCAACAAAAAA___AA
.(((......((((((....))))))...(((((.......((..(((........)))..))((((......)))).)))))...............)))................... (-14.98 = -14.90 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:26 2006